9LFL
Cryo-em structure of linker-extended biparatopic antibody ba1-gp4 in complex with tnfr2
PDB DOI: 10.2210/pdb9lfl/pdb
Classification: IMMUNE SYSTEM Organism(s): Salmonella Enterica , Enterobacter Aerogenes
Deposited: 2025-01-08 Deposition Author(s): Akiba, H. , Fujita, J. , Kamada, H. , Kanada, R. , Matsumoto, S. , Miyata, T. , Namba, K. , Ohno, H. , Okuno, Y. , Otsuki, T.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.73 Å
Cryo-em structure of linker-extended biparatopic antibody ba1-gp4 in complex with tnfr2
Akiba, H. , Fujita, J. , Kamada, H. , Kanada, R. , Matsumoto, S. , Miyata, T. , Namba, K. , Ohno, H. , Okuno, Y. , Otsuki, T.
Primary Citation of Related Structures: 9LFL
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Tumor necrosis factor receptor superfamily member 1B | A | 152 | Salmonella Enterica , Enterobacter Aerogenes | TPYAPEPGSTCRLREYYDQTAQMCCSKCSPGQHAKVFCTKTSDTVCDSCEDSTYTQLWNWVPECLSCGSRCSSDQVETQACTREQNRICTCRPGWYCALSKQEGCRLCAPLRKCRPGFGVARPGTETSDVVCKPCAPGTFSNTTSSTDICRP |
| TR92 heavy chain | B | 221 | Salmonella Enterica , Enterobacter Aerogenes | KVQLQQSGAELVKPGASVKLSCKASGYTFTESIIHWVKQRSGQGLEWIGWFYPGSDNINYNEKFKDKATLTADKSSSTVYMELTRLTSEDSAVYFCASHEGPYVYFDYWGQGTTLTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS |
| TR92 light chain | C | 211 | Salmonella Enterica , Enterobacter Aerogenes | IVMTQSHKFMSTSVGDRVSITCKASQDVSTAVAWYQQKPGQSPKLLIYWTSTRHTGVPDRFTGSGSGTDYTLTISSVQAEDLALYYCQHHYSTPYTFGGGTKLEIQRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG |
| TR96 heavy chain | D | 219 | Salmonella Enterica , Enterobacter Aerogenes | EVQLQQSGAELVKPGASVKLSCTPSGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGYTEYDPKFQDKATITADTSSNTAYLQLSSLTSEDTAVYYCADTQLYYWGQGTTLTVSSASVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG |
| TR96 light chain | E | 210 | Salmonella Enterica , Enterobacter Aerogenes | QIVLTQSPAIMSASLGERVTMTCTASSSVSSTYLHWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISNMEAEDAATYYCHQYHRSPLTFGAGTKLELKSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2025-01-08 Deposition Author(s): Akiba, H. , Fujita, J. , Kamada, H. , Kanada, R. , Matsumoto, S. , Miyata, T. , Namba, K. , Ohno, H. , Okuno, Y. , Otsuki, T.