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9KLO

Cryo-em structure of chcas12b-sgrna-extended non-target dna ternary complex (complex-b)

PDB DOI: 10.2210/pdb9klo/pdb

Classification: RNA BINDING PROTEIN/RNA/DNA
Organism(s): Candidatus Hydrogenedentes Bacterium Adurb.Bin170 , Synthetic Construct

Deposited: 2024-11-15
Deposition Author(s): Gan, J. , Li, J. , Li, Y. , Lin, J. , Pei, X.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.81 Å

9klo
Literature

Cryo-em structure of chcas12b-sgrna-extended non-target dna ternary complex (complex-b)

Gan, J. , Li, J. , Li, Y. , Lin, J. , Pei, X.

Primary Citation of Related Structures: 9KLO


Proteins
Molecule Chains Sequence Length Organism Sequence
C2c1 CRISPR-Cas endonuclease RuvC-like domain-containing protein A 1496 Candidatus Hydrogenedentes Bacterium Adurb.Bin170 , Synthetic Construct PADDLSTQRAYTLRLQGTDPEDQSWRDALWMTHEAVNAGGRAFGDWLLTLRGGIAHELADTPVKGKKDITDELRKKRRILLALSWLSVESRRGAPDKFIVAGGEEPAGSRNEKVLQALKEILKRRGLSAEESESWMSDCRASLSAAIRDDAVWVNRSAAFDDAQVRIGASLTREDIWDMLDPFFGSREAYLTPAKKKKEDEDSSEGTGEEKAKDLVQKAGQWLSSRFGTGKGANFDAMAEVYSKISEWAGTAQEGVSGKEGIKNLADALAAFSPVSQNLEGVLKLISGPGYKSATRNLLGELDSLPVVSRDHLSALHEKAAEDTVKCKESTGTKGRRPYADAILNDVEKRCGFTYLTDSDNRSVSILDTSEFPSDYKWGTARHSEFAVILDHAARRISVAHSWIKLAEAERDRCEEDAAKVYDLPDKVKEWLDTFCSNRSDISGAQGEGYRIRRKAIEGWKEVVASWGRSSCITAEDRVAAARALQDDPEIDKFGAIQLFEILAQDEALCVWHKDGDVAKSPDAQMLIDYVLASDAESKKRRFKVPAYRHPDALLHPIFCDFGNSRWDITYDIHGARGKKKAKRGSKKEEAMPRGVAMKLWTGSDVLSVSLRWQSKKLAADLALDQEAEEVTDTAAVSRADRLGRAAAGIDRGAGVTIAGLFEEAHWNGRLQAPRQQLEAIAAVRDNQKLSSEERERRIAFMKDRIRWLVTFSAKLRPQGPWHSYAPTQGLQSDPKYWPHSEINKKRKGQAKLILSRLPGLRILSVDLGHRFAAACAVWETMSSEAIQEACRLANHQLPAPADLYLHLKRTVQKNLIDGEKTVEESTVYRRIGADRLPDGTAHPAPWARLDRQFLIKLQGEEKVREASNEEVWQVHLMESALGLSFPLIDRLVYAGWGGTEKQAARLEALREKGWKPTGTPADQDEEGGGYKPSLAVDELMFSAVRTLRLALKYHGDRARIAFALTADYKPMPGDTRYYFSEAKDRSSGADAAEREAKHKDYLLDMLLLWHDLAFSRKWRDEEAKELWNLHIAALPGYQAPAAPIQEEAGQGRKKAREEARAKMTPAAEALLADGTLREKLHGLWKERWEKDDAQWKKHLRWMKDGILPRGGRAATPSIRYVGGLSLTRLATLTEFRRKVQVGFYTRLFPSGEKREIKEAFGQTALDALERLREQRVKQLASRIAEAALGAGRVSRTALKQDPKRPEARVDAACHAVIIENLEHYRPEETRTRRENRGLMNWASSKVKKYLSEACQLHGLFLREVPAGYTSRQDSRTGAPGMRCQDVTVKTFLNSPFWQKQCVQAQKNKSTARDRFLCALKEAVAQGGMEEEKKMGPIRVPVPGGEVFVSADAASPAAKGLQADLNAAANIGLRALLDPDWPGKWWYVPCDRKTAYPAKEKVEGSAAVDVKQALPFVLPEEKENKGKTKGGKKGKGEVMNLWRDVSAEPLMTGQWLDYTAYRKEVENRVIQVLTAQLKARNPLRFGNLGDEEEIPY

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
sgRNA b 115 NA GCUUCUACAGGAGGCGAAAAGACUGCGGAACGUGUCUUCCCCUUCAAUGGGCGUGGCACCGCAGCGUUGUUCAGUCCUGAUCAACGGACACGGAUAUGUUGAAGAACACCAUGAC
Target DNA strand c 51 NA CGCCCTTGCTCACGTCATGGTGTTCTTCAACATATCCCAACGCATGGTGGC
Non-target DNA strand d 51 NA GCCACCATGCGTTGTTTTTTTTTTTTTTTTTTTTTTTTGTGAGCAAGGGCG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-11-15
Deposition Author(s): Gan, J. , Li, J. , Li, Y. , Lin, J. , Pei, X.