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9KL8

Co-crystal structure of human 8-oxoguanine glycosylase n149c mutant with dna containing photocaged 8-oxoguanine after deprotection

PDB DOI: 10.2210/pdb9kl8/pdb

Classification: LYASE
Organism(s): Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2024-11-14
Deposition Author(s): Ban, Y. , Hosokawa, Y. , Imura, T. , Maestre-Reyna, M. , Shih, H.-Y. , Yamamoto, J. , Yang, K.-C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.48 Å

9kl8
Literature

Co-crystal structure of human 8-oxoguanine glycosylase n149c mutant with dna containing photocaged 8-oxoguanine after deprotection

Ban, Y. , Hosokawa, Y. , Imura, T. , Maestre-Reyna, M. , Shih, H.-Y. , Yamamoto, J. , Yang, K.-C.

Primary Citation of Related Structures: 9KL8


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*G)-3') b 16 NA TGGTAGACCTGGACGC
DNA (5'-D(*AP*(8OG)P*GP*TP*CP*TP*AP*C)-3') c 16 NA AGCGTCCAGGTCTACC

Proteins
Molecule Chains Sequence Length Organism Sequence
N-glycosylase/DNA lyase A 337 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MGSSHHHHHHSSGLVPRGSHMGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSCNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADLRQSR
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2024-11-14
Deposition Author(s): Ban, Y. , Hosokawa, Y. , Imura, T. , Maestre-Reyna, M. , Shih, H.-Y. , Yamamoto, J. , Yang, K.-C.