PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9KKY

Co-crystal structure of human 8-oxoguanine glycosylase n149c mutant with dna containing photocaged 8-oxoguanine

PDB DOI: 10.2210/pdb9kky/pdb

Classification: LYASE
Organism(s): Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2024-11-14
Deposition Author(s): Ban, Y. , Hosokawa, Y. , Imura, T. , Maestre-Reyna, M. , Shih, H.-Y. , Yamamoto, J. , Yang, K.-C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.81 Å

Literature

Co-crystal structure of human 8-oxoguanine glycosylase n149c mutant with dna containing photocaged 8-oxoguanine

Ban, Y. , Hosokawa, Y. , Imura, T. , Maestre-Reyna, M. , Shih, H.-Y. , Yamamoto, J. , Yang, K.-C.

Primary Citation of Related Structures: 9KKY


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*G)-3') b 16 NA TGGTAGACCTGGACGC
DNA (5'-D(*AP*(8OG)P*GP*TP*CP*TP*AP*C)-3') c 16 NA AGCGTCCAGGTCTACC

Proteins
Molecule Chains Sequence Length Organism Sequence
N-glycosylase/DNA lyase A 337 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MGSSHHHHHHSSGLVPRGSHMGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSCNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADLRQSR
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2024-11-14
Deposition Author(s): Ban, Y. , Hosokawa, Y. , Imura, T. , Maestre-Reyna, M. , Shih, H.-Y. , Yamamoto, J. , Yang, K.-C.