9KGT
Crystal structure of topoisomerase iv from klebsiella pneumoniae in complex with dna and bwc0977, a dual-targeting broad-spectrum novel bacterial topoisomerase inhibitor.
PDB DOI: 10.2210/pdb9kgt/pdb
Classification: ISOMERASE/DNA/ISOMERASE INHIBITOR Organism(s): Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 , Synthetic Construct
Deposited: 2024-11-09 Deposition Author(s): Aoki, M. , Balasubramanian, V. , Datta, S. , Hameed, S. , Katagihallimath, N. , Murakami, S. , Okada, U. , Ramachandran, V. , Yamashita, E.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 3.05 Å
Crystal structure of topoisomerase iv from klebsiella pneumoniae in complex with dna and bwc0977, a dual-targeting broad-spectrum novel bacterial topoisomerase inhibitor.
Aoki, M. , Balasubramanian, V. , Datta, S. , Hameed, S. , Katagihallimath, N. , Murakami, S. , Okada, U. , Ramachandran, V. , Yamashita, E.
Primary Citation of Related Structures: 9KGT
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA topoisomerase 4 subunit B,DNA topoisomerase 4 subunit A | A | 734 | Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 , Synthetic Construct | MGSSGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVKEGHVYVALPPLYRIDLGKEVYYALTEEEKTGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLVISDEDEQQTTAIMDMLLAKKRSEDRRNWLQEKGDMADLEVESMSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAVWSKEDGAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMNNLLKKELQADADAFGDDRRSPLHEREEAKALEHHHHHH |
| DNA topoisomerase 4 subunit B,DNA topoisomerase 4 subunit A | B | 734 | Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 , Synthetic Construct | MGSSGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVKEGHVYVALPPLYRIDLGKEVYYALTEEEKTGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLVISDEDEQQTTAIMDMLLAKKRSEDRRNWLQEKGDMADLEVESMSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAVWSKEDGAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMNNLLKKELQADADAFGDDRRSPLHEREEAKALEHHHHHH |
| DNA topoisomerase 4 subunit B,DNA topoisomerase 4 subunit A | C | 734 | Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 , Synthetic Construct | MGSSGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVKEGHVYVALPPLYRIDLGKEVYYALTEEEKTGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLVISDEDEQQTTAIMDMLLAKKRSEDRRNWLQEKGDMADLEVESMSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAVWSKEDGAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMNNLLKKELQADADAFGDDRRSPLHEREEAKALEHHHHHH |
| DNA topoisomerase 4 subunit B,DNA topoisomerase 4 subunit A | D | 734 | Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 , Synthetic Construct | MGSSGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVKEGHVYVALPPLYRIDLGKEVYYALTEEEKTGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLVISDEDEQQTTAIMDMLLAKKRSEDRRNWLQEKGDMADLEVESMSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAVWSKEDGAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMNNLLKKELQADADAFGDDRRSPLHEREEAKALEHHHHHH |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (5'-D(P*TP*TP*AP*CP*GP*TP*TP*GP*TP*AP*TP*GP*AP*TP*CP*AP*TP*AP*CP*AP*AP*CP*GP*TP*AP*A)-3') | e | 26 | NA | TTACGTTGTATGATCATACAACGTAA |
| DNA (5'-D(P*TP*TP*AP*CP*GP*TP*TP*GP*TP*AP*TP*GP*AP*TP*CP*AP*TP*AP*CP*AP*AP*CP*GP*TP*AP*A)-3') | f | 26 | NA | TTACGTTGTATGATCATACAACGTAA |
| DNA (5'-D(P*TP*TP*AP*CP*GP*TP*TP*GP*TP*AP*TP*GP*AP*TP*CP*AP*TP*AP*CP*AP*AP*CP*GP*TP*AP*A)-3') | g | 26 | NA | TTACGTTGTATGATCATACAACGTAA |
| DNA (5'-D(P*TP*TP*AP*CP*GP*TP*TP*GP*TP*AP*TP*GP*AP*TP*CP*AP*TP*AP*CP*AP*AP*CP*GP*TP*AP*A)-3') | h | 26 | NA | TTACGTTGTATGATCATACAACGTAA |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2024-11-09 Deposition Author(s): Aoki, M. , Balasubramanian, V. , Datta, S. , Hameed, S. , Katagihallimath, N. , Murakami, S. , Okada, U. , Ramachandran, V. , Yamashita, E.