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FASTA Sequence PDB Format mmCIF Format
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9KFX

Crystal structure of synthetic ppr-dyw in complex with target rna

PDB DOI: 10.2210/pdb9kfx/pdb

Classification: HYDROLASE/RNA
Organism(s): Synthetic Construct , Synthetic Construct

Deposited: 2024-11-07
Deposition Author(s): Gutmann, B. , Ichinose, M. , Kakuta, Y. , Nakamura, T. , Okada, A. , Teramoto, T. , Urushihara, R. , Yagi, Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.7 Å

9kfx
Literature

Crystal structure of synthetic ppr-dyw in complex with target rna

Gutmann, B. , Ichinose, M. , Kakuta, Y. , Nakamura, T. , Okada, A. , Teramoto, T. , Urushihara, R. , Yagi, Y.

Primary Citation of Related Structures: 9KFX


Proteins
Molecule Chains Sequence Length Organism Sequence
Synthetic PPR-DYW protein A 612 Synthetic Construct , Synthetic Construct NSVFSWNSKIRGYARNGQPEEALSLYSQMRRSGIKPDNYTFPFVLKACASLSSLKEGKQIHGHVIKSGFESDVYVQSALIDMYAKCGELEDARKVFDEMPERNVVSWNAMISGYAQNGQSEEALELFREMQQEGIKPSEFTFCSVLSACASLGSLEMGKQIHGYVIKSGFESIVFVGNALIDMYAKCGSIEDARKVFDEMPERTVVSWTAMISGYAQNGQSEEALELFREMQREGVKPDEVTLPSVLSACANLGALEQGKQIHAYVIKSGFESDVFVGSALIDMYAKCGSIEDARKVFDKMPERDVVSWNAMIAAYAQHGHGKEALQLFQQMQQEGVKPSEVTFTSILSACSHAGLVDEGHHYFESMSPDYGITPRVEHYGCMVDLLGRAGRLDEAEDLIKSMPFQPNVVVWGTLLGACRVHGDVERGERAAERILELDPESAAPYVLLSNIYAAAGRWDEAAKVRKLMKERGVKKEPGCSWIEVNNKVHEFVAGDKSHPQTKEIYAELERLSKQMKEAGYVPDTKFVLHDVEEEEKEQLLCYHSEKLAIAFGLISTPPGTPLRIIKNLRVCGDCHTATKFISKIVGREIVVRDANRFHHFKDGVCSCGDYW
Synthetic PPR-DYW protein B 612 Synthetic Construct , Synthetic Construct NSVFSWNSKIRGYARNGQPEEALSLYSQMRRSGIKPDNYTFPFVLKACASLSSLKEGKQIHGHVIKSGFESDVYVQSALIDMYAKCGELEDARKVFDEMPERNVVSWNAMISGYAQNGQSEEALELFREMQQEGIKPSEFTFCSVLSACASLGSLEMGKQIHGYVIKSGFESIVFVGNALIDMYAKCGSIEDARKVFDEMPERTVVSWTAMISGYAQNGQSEEALELFREMQREGVKPDEVTLPSVLSACANLGALEQGKQIHAYVIKSGFESDVFVGSALIDMYAKCGSIEDARKVFDKMPERDVVSWNAMIAAYAQHGHGKEALQLFQQMQQEGVKPSEVTFTSILSACSHAGLVDEGHHYFESMSPDYGITPRVEHYGCMVDLLGRAGRLDEAEDLIKSMPFQPNVVVWGTLLGACRVHGDVERGERAAERILELDPESAAPYVLLSNIYAAAGRWDEAAKVRKLMKERGVKKEPGCSWIEVNNKVHEFVAGDKSHPQTKEIYAELERLSKQMKEAGYVPDTKFVLHDVEEEEKEQLLCYHSEKLAIAFGLISTPPGTPLRIIKNLRVCGDCHTATKFISKIVGREIVVRDANRFHHFKDGVCSCGDYW

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
rpoA RNA (5'-R(*UP*UP*AP*CP*AP*CP*GP*UP*GP*CP*AP*AP*AP*AP*UP*CP*UP*G)-3') r 18 NA UUACACGUGCAAAAUCUG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2024-11-07
Deposition Author(s): Gutmann, B. , Ichinose, M. , Kakuta, Y. , Nakamura, T. , Okada, A. , Teramoto, T. , Urushihara, R. , Yagi, Y.