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9K43

Cryo-em structure of arabidopsis thaliana h2a.z-nucleosome with 147bp widom 601 dna (c2 symmetry)

PDB DOI: 10.2210/pdb9k43/pdb

Classification: NUCLEAR PROTEIN/DNA
Organism(s): Arabidopsis Thaliana , Synthetic Construct

Deposited: 2024-10-21
Deposition Author(s): Dong, A. , Wang, Y.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.87 Å

Literature

Cryo-em structure of arabidopsis thaliana h2a.z-nucleosome with 147bp widom 601 dna (c2 symmetry)

Dong, A. , Wang, Y.

Primary Citation of Related Structures: 9K43


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.1 A 136 Arabidopsis Thaliana , Synthetic Construct MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3.1 E 136 Arabidopsis Thaliana , Synthetic Construct MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 103 Arabidopsis Thaliana , Synthetic Construct MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 103 Arabidopsis Thaliana , Synthetic Construct MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Probable histone H2A variant 3 C 134 Arabidopsis Thaliana , Synthetic Construct MSGKGAKGLIMGKPSGSDKDKDKKKPITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSAKE
Probable histone H2A variant 3 G 134 Arabidopsis Thaliana , Synthetic Construct MSGKGAKGLIMGKPSGSDKDKDKKKPITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSAKE
Histone H2B.1 D 148 Arabidopsis Thaliana , Synthetic Construct MAPRAEKKPAEKKTAAERPVEENKAAEKAPAEKKPKAGKKLPPKEAGDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Histone H2B.1 H 148 Arabidopsis Thaliana , Synthetic Construct MAPRAEKKPAEKKTAAERPVEENKAAEKAPAEKKPKAGKKLPPKEAGDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Widom 601 DNA (147-MER) i 147 NA CTGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCTGT
Widom 601 DNA (147-MER) j 147 NA ACAGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCCAG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-10-21
Deposition Author(s): Dong, A. , Wang, Y.