PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9K40

Cryo-em structure of arabidopsis thaliana h2a-nucleosome with arabidopsis native 147bp dna 15.2.2 (c2 symmetry)

PDB DOI: 10.2210/pdb9k40/pdb

Classification: NUCLEAR PROTEIN/DNA
Organism(s): Arabidopsis Thaliana , Synthetic Construct

Deposited: 2024-10-21
Deposition Author(s): Dong, A. , Wang, Y.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.15 Å

9k40
Literature

Cryo-em structure of arabidopsis thaliana h2a-nucleosome with arabidopsis native 147bp dna 15.2.2 (c2 symmetry)

Dong, A. , Wang, Y.

Primary Citation of Related Structures: 9K40


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.1 A 136 Arabidopsis Thaliana , Synthetic Construct MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3.1 E 136 Arabidopsis Thaliana , Synthetic Construct MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 103 Arabidopsis Thaliana , Synthetic Construct MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 103 Arabidopsis Thaliana , Synthetic Construct MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A.6 C 130 Arabidopsis Thaliana , Synthetic Construct MAGRGKTLGSGGAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGASKPQED
Histone H2A.6 G 130 Arabidopsis Thaliana , Synthetic Construct MAGRGKTLGSGGAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGASKPQED
Histone H2B.1 D 148 Arabidopsis Thaliana , Synthetic Construct MAPRAEKKPAEKKTAAERPVEENKAAEKAPAEKKPKAGKKLPPKEAGDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Histone H2B.1 H 148 Arabidopsis Thaliana , Synthetic Construct MAPRAEKKPAEKKTAAERPVEENKAAEKAPAEKKPKAGKKLPPKEAGDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
15.2.2 DNA (147-MER) i 147 NA ACCTTTATTGACTCCATAATTGACCAATTGAGCGGCTCGATTCAACTGTCAATAACTTCAAATGAAGCAAGAGCCTTATCGTATTCTCCGCACGATGGTGCTTTAATCCACCGCAACTTTCCTCTTTAATAAAGGCACAAGCATTAA
15.2.2 DNA (147-MER) j 147 NA TTAATGCTTGTGCCTTTATTAAAGAGGAAAGTTGCGGTGGATTAAAGCACCATCGTGCGGAGAATACGATAAGGCTCTTGCTTCATTTGAAGTTATTGACAGTTGAATCGAGCCGCTCAATTGGTCAATTATGGAGTCAATAAAGGT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-10-21
Deposition Author(s): Dong, A. , Wang, Y.