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9K31

Cryo-em structure of the ynpscas9-guide rna-target dna complex

PDB DOI: 10.2210/pdb9k31/pdb

Classification: RNA BINDING PROTEIN
Organism(s): Metagenome , Synthetic Construct

Deposited: 2024-10-18
Deposition Author(s): Nagahata, N. , Nishimasu, H. , Yamada, S. , Yamashita, K.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.38 Å

9k31
Literature

Cryo-em structure of the ynpscas9-guide rna-target dna complex

Nagahata, N. , Nishimasu, H. , Yamada, S. , Yamashita, K.

Primary Citation of Related Structures: 9K31


Proteins
Molecule Chains Sequence Length Organism Sequence
YnpsCas9 A 781 Metagenome , Synthetic Construct MGHHHHHHGSLQDSEVNQEAKPEVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGGSNTETREQVLGIAFGPKHVGIALVARGASSEEVLFVAEVRLRDRKSLLADRRALRRGRRGRKRYRQPKIPQRGGGATSQSGEESERGRAAAPEYRRATGLNTGRRRCKFVDPQTGEICGWNTPRKANVRDLLLWNICRHLPVSVSEQAGFLAYVNQTNLHRAEILGALPAEEQAPLEAVFSQQRRPKDERLKDRLRRLGVDRHLRSQVTDIVGITSRRPLSGRLSFCREHFLRHHEQSRVPRPSVWLPNTVEMKQADVLKVCRQEVAPRWRVDCIVLERANFDLQLLRQQTAIEWSVEDWQRGPRWGYRNTFEAKKQEQGNRCAYCGSKPTAKNRLRLELEAVIPGGGDTWENLVLSCRKCNEGKGNRSPAQAGMRFWTDTETGETLSPAPLGAAHVSRYMTQTDQGWRRLQAALQQVFPQAAVEHTWGYVTSFYRNRWNLPKKHFVDAAVIASSHELERPVSVPEQPQRFAPTSGGKQLFDTNPLSKRPEGRFAQSKAIVCEQGTLAFKDVAKVENPRKRATLQRVADEATAAAKARGETPPTAFTAEMLPKIPFKSVRLAKQDASDTNTRRLGRHWFKVASAVNIATIVYQLDGKVCMQLQRNPAVFRHDPGLPQGARVVATFRKGDLVECDAGRGRVTKNHSNCTLTVELLDSGKEVTRLAKSFRPRHG

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Guide RNA b 420 NA GGGGAAAUUAGGUGCGCUUGGCAUUUCGCCCUCGCAUUGGUGGACAGCACGGGUUCUGGGGCGAUCAGCGAGGGGAGCGAGGGCGCGCGAGGAAUGAGUUGGGGACGCAGUAGGUAUGUAUAGGUUUCCACCAGUGUUGAAGGGCGAAAGCAGCCCAGCCAAGUCUCCGCCCAUGGCGGAGCACGGGAAACCGGUGGGGAAACCCGGCCGGCCACCGUAAGGAGGCACGUUUGGGGAACAGGUAGGGGUAACCCUGAGUGCAACCUGGGGUGCACCUUCAGCUCCAGGCUCUGCAAGGCUCGGCCCAGAGGAUUAACGCCCUAAUCCGCCUCUGGCGGAAGGGAGAGAAAGGCGGUCGUGAGGCCGCAAGGCAAGCCGAGCCAUACUCCUGUACCCAAACCUGAGCGGGAAGGAGAACAA
Target DNA strand c 43 NA ACCCGTTCCCCGCCAAGCGCACCTAATTTCCCCGGGATCCTCT
Non-target DNA strand d 43 NA AGAGGATCCCGGGGTTTAATCCACGCGAACCGGGGGAACGGGT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-10-18
Deposition Author(s): Nagahata, N. , Nishimasu, H. , Yamada, S. , Yamashita, K.