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9K30

Cryo-em structure of the tbaiscb-omega rna-target dna complex

PDB DOI: 10.2210/pdb9k30/pdb

Classification: RNA BINDING PROTEIN
Organism(s): Tissierellia Bacterium , Synthetic Construct

Deposited: 2024-10-18
Deposition Author(s): Nagahata, N. , Nishimasu, H. , Yamada, S. , Yamashita, K.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.17 Å

9k30
Literature

Cryo-em structure of the tbaiscb-omega rna-target dna complex

Nagahata, N. , Nishimasu, H. , Yamada, S. , Yamashita, K.

Primary Citation of Related Structures: 9K30


Proteins
Molecule Chains Sequence Length Organism Sequence
TbaIscB A 1068 Tissierellia Bacterium , Synthetic Construct MSKHHHHSGHHHTGHHHHSGSHHHTGKTEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTNSSSAAGGEEDKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMTAIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSSGSMKVFVVDKNNNPLMPTHPAKARILLKNGKATVKRVEPFVIKLNYTIDNPKTQNVKVGIADGARNAGLAVVVEKSKKDDEVVFKGQIDLNNMIKDKMEERSNYRRCRRTRLRYRKPRFNNRKRNKCVVCGGNTQSGKNTCRLHKVTDKQNKLKNTYWLPPSLKARKDCIVRVLNQLNKWIPINNIIIETGRFDIQKLVNPDLSGAGYQQGAKYGRDSVKSALIYEYGKEVRDENNKIKKIARCCYCGKEGVPLEIEAIKPRGQGGTDAWHNLTLACKKCNKEKGNRTPQQANMKLIVKPSKFHLSKTLKYAAQLQQGKNYLRQAIKDAVNIFPSYTYGQFTSWQRKRFNIPKTHMNDAIVIAITNYDTENKPRLPVVNCDEYYIKPIGTKSRSLFTATCYSPKDYCYNNEGKRKRINSINAAVLTNNNKTIRALKEINKACVLLEKNNKIVPKAIRMIEDIPDNAIMVVEKGDTVECNVGKKKLRGIVSACMSNGNIKINVQGKQQSASLKKTRLIYKKQNIIFQKIHKTTKSSGLVPRGSHMASWSHPQFEKGGGSGGGSGGSAWSHPQFEKN

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Omega RNA b 443 NA GGGGAAAUUAGGUGCGCUUGGCCUUUCAGCUAUAGACUUUCACGAUCUACAAUUGUAACCGACCCGAAAAUACCCAUUACAUAAGUCUCCGUAUGAUUUAUAACUAAUACAAUAUCGAAGAUUAACUUUCUGUUAAAAAACCGUUGCAAUCUGCGAGAAAUGUGUCUAUAGCUGUGAGUCAGCCCUAGUGACAAACCCCUAGUAAUAGGAAUAAGGAUGAACUACCUUUGCUGCAAUGUUAAAGUAUCACUUUAAAAUGUUCGAUCCAGUUUUAAACCCUGAUACCUUAUAAGUAGGACAACUCGCCCCACGGGGGAAGGUAAAAUAGGUGUGAGCCUAUCCACGUCUUAUAAGGAUGUACACCAGCAAAGUUGGGCAAGGAUCAAAUUAACCUUUAUUCUAGUAUUCUAGUAAUAAAGAGAAAAUCUUAUUAUGAGGUGCAU
Target DNA strand c 43 NA ACCCGTTGGCCTCCAAGCGCACCTAATTTCCCCGGGATCCTCT
Non-target DNA strand d 43 NA AGAGGATCCCGGGGAAATTAGGTGGCGAACCAGGCCAACGGGT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-10-18
Deposition Author(s): Nagahata, N. , Nishimasu, H. , Yamada, S. , Yamashita, K.