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FASTA Sequence PDB Format mmCIF Format
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9JXS

Cryo-em structure of cas5-hnh cascade bound with dsdna

PDB DOI: 10.2210/pdb9jxs/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Candidatus Cloacimonetes Bacterium Adurb.Bin088 , Synthetic Construct

Deposited: 2024-10-11
Deposition Author(s): Liu, Y.N. , Zhang, H. , Zhu, H.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.93 Å

9jxs
Literature

Cryo-em structure of cas5-hnh cascade bound with dsdna

Liu, Y.N. , Zhang, H. , Zhu, H.

Primary Citation of Related Structures: 9JXS


Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR-associated protein Cse1 (CRISPR_cse1) C 535 Candidatus Cloacimonetes Bacterium Adurb.Bin088 , Synthetic Construct MYCAAVCFPQTKYQQRGTALKKPLVGLRKMGVEAAAWNTLKVTRDRPKLTFPDLITPQSKFLDNDLWLKYKVPIEQKEHVMYNLLCDNWVNVVYLSGKPDRISLVQTLKDAHCLQLAYSNPMDRFTVFRFLLALGYWCFANTNVEPEPDKPLPVSWIPWLEENKEYFELFGDGKRFFQADPSSRIRAITDLIHEIPTAHNLCHFKHVTDYIDGLCEACCIKGLLRLPVFTTVGGRGIGAGINNTPPFYLLWHANDLAGMLAQNWQPWDNMGIPAWLGSFQKESREVGLLAGMTWLPRKVYLHDPVPGQAACCSCGLPSEALVYSCSIEVEPVPKGLEWKDPHGVYTDQGKSLQSKIKLMSNDRYTFADRDWYSPLFSYLHAEGNSRQGKLWLVGFASDKAKSIDIWDKIIELEGTDTNDELLAQLANRATALNAMRKKPLRGDFKKSVGTPQIADIIPHAENRIAINAGKMTENRGYSWQDADTEYGELLTKVAYSLEPAQTVDARLKRGNFISRKPWPIIPESKTKPAEGDQNE
CRISPR-associated protein Cse2 (CRISPR_cse2) E 174 Candidatus Cloacimonetes Bacterium Adurb.Bin088 , Synthetic Construct MNRGTVDFIASLENLKEGDLGILRKLRGARLDEKLPGFDLFSALWWPLRQKNQRAPKREVAWLIAKLFAEFRFEQREGATLPILMGGICRKLEPKKELPRVLARFDQLASLDIMQMEEPLSVIMGILRKHQQVCLDWVGLTDVLSFWEQEPVKREWSDSFIKAYKINKEDSDVD
CRISPR system Cascade subunit CasC F 378 Candidatus Cloacimonetes Bacterium Adurb.Bin088 , Synthetic Construct MLIEIHMIQNHSPANLNRDDLGAPKTCYFGGVLRSRISSQCIKRSIRTSNDFKALLGGVRTRRLADLIQQEAGETECWKKAQEILNKCGFKNKDDNTKMLVFMSKDKIKDLARIVLDNSLGLTEAAQQVANVIAQATLAPDIALCGRMLEPNDKDKDKKVKWSNTTVEAALQVAHAISTHIARPEIDYFVAADDVPGEDAGAGHIGESMFASACFYKYFSIDWEQLVKNLKGDTNLAAHTVGAFLLAAAKTNPSGKQNSFAAHNYPDGILVEFKNSPISYANAFVRPVSVVKESDLVEQSIGQLSNYVNDIRLGYYDEQSPVIGFWFSPNNRYPLGYKHSKLASRNIGNLNELVGAVLDYIGGFKWEEVQKSKAYIGG
CRISPR system Cascade subunit CasC H 378 Candidatus Cloacimonetes Bacterium Adurb.Bin088 , Synthetic Construct MLIEIHMIQNHSPANLNRDDLGAPKTCYFGGVLRSRISSQCIKRSIRTSNDFKALLGGVRTRRLADLIQQEAGETECWKKAQEILNKCGFKNKDDNTKMLVFMSKDKIKDLARIVLDNSLGLTEAAQQVANVIAQATLAPDIALCGRMLEPNDKDKDKKVKWSNTTVEAALQVAHAISTHIARPEIDYFVAADDVPGEDAGAGHIGESMFASACFYKYFSIDWEQLVKNLKGDTNLAAHTVGAFLLAAAKTNPSGKQNSFAAHNYPDGILVEFKNSPISYANAFVRPVSVVKESDLVEQSIGQLSNYVNDIRLGYYDEQSPVIGFWFSPNNRYPLGYKHSKLASRNIGNLNELVGAVLDYIGGFKWEEVQKSKAYIGG
CRISPR system Cascade subunit CasC I 378 Candidatus Cloacimonetes Bacterium Adurb.Bin088 , Synthetic Construct MLIEIHMIQNHSPANLNRDDLGAPKTCYFGGVLRSRISSQCIKRSIRTSNDFKALLGGVRTRRLADLIQQEAGETECWKKAQEILNKCGFKNKDDNTKMLVFMSKDKIKDLARIVLDNSLGLTEAAQQVANVIAQATLAPDIALCGRMLEPNDKDKDKKVKWSNTTVEAALQVAHAISTHIARPEIDYFVAADDVPGEDAGAGHIGESMFASACFYKYFSIDWEQLVKNLKGDTNLAAHTVGAFLLAAAKTNPSGKQNSFAAHNYPDGILVEFKNSPISYANAFVRPVSVVKESDLVEQSIGQLSNYVNDIRLGYYDEQSPVIGFWFSPNNRYPLGYKHSKLASRNIGNLNELVGAVLDYIGGFKWEEVQKSKAYIGG
CRISPR system Cascade subunit CasC J 378 Candidatus Cloacimonetes Bacterium Adurb.Bin088 , Synthetic Construct MLIEIHMIQNHSPANLNRDDLGAPKTCYFGGVLRSRISSQCIKRSIRTSNDFKALLGGVRTRRLADLIQQEAGETECWKKAQEILNKCGFKNKDDNTKMLVFMSKDKIKDLARIVLDNSLGLTEAAQQVANVIAQATLAPDIALCGRMLEPNDKDKDKKVKWSNTTVEAALQVAHAISTHIARPEIDYFVAADDVPGEDAGAGHIGESMFASACFYKYFSIDWEQLVKNLKGDTNLAAHTVGAFLLAAAKTNPSGKQNSFAAHNYPDGILVEFKNSPISYANAFVRPVSVVKESDLVEQSIGQLSNYVNDIRLGYYDEQSPVIGFWFSPNNRYPLGYKHSKLASRNIGNLNELVGAVLDYIGGFKWEEVQKSKAYIGG
CRISPR system Cascade subunit CasC K 378 Candidatus Cloacimonetes Bacterium Adurb.Bin088 , Synthetic Construct MLIEIHMIQNHSPANLNRDDLGAPKTCYFGGVLRSRISSQCIKRSIRTSNDFKALLGGVRTRRLADLIQQEAGETECWKKAQEILNKCGFKNKDDNTKMLVFMSKDKIKDLARIVLDNSLGLTEAAQQVANVIAQATLAPDIALCGRMLEPNDKDKDKKVKWSNTTVEAALQVAHAISTHIARPEIDYFVAADDVPGEDAGAGHIGESMFASACFYKYFSIDWEQLVKNLKGDTNLAAHTVGAFLLAAAKTNPSGKQNSFAAHNYPDGILVEFKNSPISYANAFVRPVSVVKESDLVEQSIGQLSNYVNDIRLGYYDEQSPVIGFWFSPNNRYPLGYKHSKLASRNIGNLNELVGAVLDYIGGFKWEEVQKSKAYIGG
CRISPR system Cascade subunit CasC G 378 Candidatus Cloacimonetes Bacterium Adurb.Bin088 , Synthetic Construct MLIEIHMIQNHSPANLNRDDLGAPKTCYFGGVLRSRISSQCIKRSIRTSNDFKALLGGVRTRRLADLIQQEAGETECWKKAQEILNKCGFKNKDDNTKMLVFMSKDKIKDLARIVLDNSLGLTEAAQQVANVIAQATLAPDIALCGRMLEPNDKDKDKKVKWSNTTVEAALQVAHAISTHIARPEIDYFVAADDVPGEDAGAGHIGESMFASACFYKYFSIDWEQLVKNLKGDTNLAAHTVGAFLLAAAKTNPSGKQNSFAAHNYPDGILVEFKNSPISYANAFVRPVSVVKESDLVEQSIGQLSNYVNDIRLGYYDEQSPVIGFWFSPNNRYPLGYKHSKLASRNIGNLNELVGAVLDYIGGFKWEEVQKSKAYIGG
CRISPR system Cascade subunit CasD B 388 Candidatus Cloacimonetes Bacterium Adurb.Bin088 , Synthetic Construct MSAPPNTLFLRLEGALQSWGSNEAKFALRRTADAPTKSGVLGLLCAAMGIGRAEAADSWLPKLANLRMGVRIDRPGIRWWDFHTVGAGQRMRMAELKAPKKPSMVGAALAETLTPSKVKTRAETLLSRREYLADASFLVALQGEPELVAKLSAALAKPVWAIYLGRKSCPPSRPVCEHPPGFYNTLEEALSAVPLQKRWHNEPLPQILPCVMDWIPGYDGEHAPDDAEIHYDLPVSFQPPRHLPRFVIRRELVVGEDVQVSRETGTSVWRPKGTRADYNNSEYKKVRAERLVMDHAACMVCKAPATTVQHVNYRRAGGKEIPEDLRALCRLCADACTMLEYGSGMTTNRIDPCDPIWRERILAKRKEIVEFRSRGQRFRKMKPEEENG
CRISPR-associated endoribonuclease Cse3 D 272 Candidatus Cloacimonetes Bacterium Adurb.Bin088 , Synthetic Construct MIYLSRLLIDTGGNPDRPRPGRKWLDNIYNVHRRLSMAFPSGLRREQDPHFLKPFSPNDFQKTPFLFRVDNNIDGNDKRAIIIVQSVLEPDWDYCFQNALDFLAAPPETKEYNPEFKAGQLLRFRLRVNASVRRHIPEMVQQDGQTIETGKILHKRVSLTWDASSTPDQALADWLAAKSPKLGFTLQRCELLQLGWVYGSKPEPKNVKVKEQGQGYWREHKYNPLRFRAALLEGVLEVDDPKLFLKTLSSGIGKAKSFGFGLLSVLPIRNDG

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (54-MER) m 54 NA GCTTGACATGTGTGCTAAGCGCACCTAATTTCCTGACGGCAATCCTTACCAGCT
RNA (61-MER) a 61 NA GUGAACCGGAUUGCCGUCAGGAAAUUAGGUGCGCUUAGCAGUAUUCCCCACGCAUGUGGGG
non-target DNA n 54 NA AGCTGGTAAGGATTGCCGTCAGGAAATTAGGTGCGCTTAGCACACATGTCAAGC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-10-11
Deposition Author(s): Liu, Y.N. , Zhang, H. , Zhu, H.