PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9JSN

Clostridium perfringens iota toxin pore ib in prepore vii state

PDB DOI: 10.2210/pdb9jsn/pdb

Classification: TOXIN
Organism(s): Clostridium Perfringens

Deposited: 2024-09-30
Deposition Author(s): Noda, T. , Sugita, Y. , Tsuge, H. , Yamada, T. , Yoshida, T.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.73 Å

9jsn
Literature

Clostridium perfringens iota toxin pore ib in prepore vii state

Noda, T. , Sugita, Y. , Tsuge, H. , Yamada, T. , Yoshida, T.

Primary Citation of Related Structures: 9JSN


Proteins
Molecule Chains Sequence Length Organism Sequence
Iota toxin component Ib A 683 Clostridium Perfringens NNFFDVRFFSAAWEDEDLDTDNDNIPDAYEKNGYTIKDSIAVKWNDSFAEQGYKKYVSSYLESNTAGDPYTDYQKASGSIDKAIKLEARDPLVAAYPVVGVGMENLIISTNEHASSDQGKTVSRATTNSKTDANTVGVSISAGYQNGFTGNITTSYSHTTDNSTAVQDSNGESWNTGLSINKGESAYINANVRYYNTGTAPMYKVTPTTNLVLDGETLATIKAQDNQIGNNLSPNETYPKKGLSPLALNTMDQFNARLIPINYDQLKKLDSGKQIKLETTQVSGNYGTKNSQGQIITEGNSWSNYISQIDSVSASIILDTGSQTFERRVAAKEQGNPEDKTPEITIGEAIKKAFSATKNGELLYFNGIPIDESCVELIFDDNTSEIIKEQLKYLDDKKIYNVKLERGMNILIKVPSYFTNFDEYNNFPASWSNIDTKNQDGLQSVANKLSGETKIIIPMSKLKPYKRYVFSGYSKDPSTSNSITVNIKSKEQKTDYLVPEKDYTKFSYEFETTGKDSSDIEITLTSSGVIFLDNLSITELNSTPEILKEPEIKVPSDQEILDAHNKYYADIKLDTNTGNTYIDGIYFEPTQTNKEALDYIQKYRVEATLQYSGFKDIGTKDKEIRNYLGDQNQPKTNYINFRSYFTSGENVMTYKKLRIYAVTPDNRELLVLSVNLEHHHHHH
Iota toxin component Ib B 683 Clostridium Perfringens NNFFDVRFFSAAWEDEDLDTDNDNIPDAYEKNGYTIKDSIAVKWNDSFAEQGYKKYVSSYLESNTAGDPYTDYQKASGSIDKAIKLEARDPLVAAYPVVGVGMENLIISTNEHASSDQGKTVSRATTNSKTDANTVGVSISAGYQNGFTGNITTSYSHTTDNSTAVQDSNGESWNTGLSINKGESAYINANVRYYNTGTAPMYKVTPTTNLVLDGETLATIKAQDNQIGNNLSPNETYPKKGLSPLALNTMDQFNARLIPINYDQLKKLDSGKQIKLETTQVSGNYGTKNSQGQIITEGNSWSNYISQIDSVSASIILDTGSQTFERRVAAKEQGNPEDKTPEITIGEAIKKAFSATKNGELLYFNGIPIDESCVELIFDDNTSEIIKEQLKYLDDKKIYNVKLERGMNILIKVPSYFTNFDEYNNFPASWSNIDTKNQDGLQSVANKLSGETKIIIPMSKLKPYKRYVFSGYSKDPSTSNSITVNIKSKEQKTDYLVPEKDYTKFSYEFETTGKDSSDIEITLTSSGVIFLDNLSITELNSTPEILKEPEIKVPSDQEILDAHNKYYADIKLDTNTGNTYIDGIYFEPTQTNKEALDYIQKYRVEATLQYSGFKDIGTKDKEIRNYLGDQNQPKTNYINFRSYFTSGENVMTYKKLRIYAVTPDNRELLVLSVNLEHHHHHH
Iota toxin component Ib C 683 Clostridium Perfringens NNFFDVRFFSAAWEDEDLDTDNDNIPDAYEKNGYTIKDSIAVKWNDSFAEQGYKKYVSSYLESNTAGDPYTDYQKASGSIDKAIKLEARDPLVAAYPVVGVGMENLIISTNEHASSDQGKTVSRATTNSKTDANTVGVSISAGYQNGFTGNITTSYSHTTDNSTAVQDSNGESWNTGLSINKGESAYINANVRYYNTGTAPMYKVTPTTNLVLDGETLATIKAQDNQIGNNLSPNETYPKKGLSPLALNTMDQFNARLIPINYDQLKKLDSGKQIKLETTQVSGNYGTKNSQGQIITEGNSWSNYISQIDSVSASIILDTGSQTFERRVAAKEQGNPEDKTPEITIGEAIKKAFSATKNGELLYFNGIPIDESCVELIFDDNTSEIIKEQLKYLDDKKIYNVKLERGMNILIKVPSYFTNFDEYNNFPASWSNIDTKNQDGLQSVANKLSGETKIIIPMSKLKPYKRYVFSGYSKDPSTSNSITVNIKSKEQKTDYLVPEKDYTKFSYEFETTGKDSSDIEITLTSSGVIFLDNLSITELNSTPEILKEPEIKVPSDQEILDAHNKYYADIKLDTNTGNTYIDGIYFEPTQTNKEALDYIQKYRVEATLQYSGFKDIGTKDKEIRNYLGDQNQPKTNYINFRSYFTSGENVMTYKKLRIYAVTPDNRELLVLSVNLEHHHHHH
Iota toxin component Ib D 683 Clostridium Perfringens NNFFDVRFFSAAWEDEDLDTDNDNIPDAYEKNGYTIKDSIAVKWNDSFAEQGYKKYVSSYLESNTAGDPYTDYQKASGSIDKAIKLEARDPLVAAYPVVGVGMENLIISTNEHASSDQGKTVSRATTNSKTDANTVGVSISAGYQNGFTGNITTSYSHTTDNSTAVQDSNGESWNTGLSINKGESAYINANVRYYNTGTAPMYKVTPTTNLVLDGETLATIKAQDNQIGNNLSPNETYPKKGLSPLALNTMDQFNARLIPINYDQLKKLDSGKQIKLETTQVSGNYGTKNSQGQIITEGNSWSNYISQIDSVSASIILDTGSQTFERRVAAKEQGNPEDKTPEITIGEAIKKAFSATKNGELLYFNGIPIDESCVELIFDDNTSEIIKEQLKYLDDKKIYNVKLERGMNILIKVPSYFTNFDEYNNFPASWSNIDTKNQDGLQSVANKLSGETKIIIPMSKLKPYKRYVFSGYSKDPSTSNSITVNIKSKEQKTDYLVPEKDYTKFSYEFETTGKDSSDIEITLTSSGVIFLDNLSITELNSTPEILKEPEIKVPSDQEILDAHNKYYADIKLDTNTGNTYIDGIYFEPTQTNKEALDYIQKYRVEATLQYSGFKDIGTKDKEIRNYLGDQNQPKTNYINFRSYFTSGENVMTYKKLRIYAVTPDNRELLVLSVNLEHHHHHH
Iota toxin component Ib E 683 Clostridium Perfringens NNFFDVRFFSAAWEDEDLDTDNDNIPDAYEKNGYTIKDSIAVKWNDSFAEQGYKKYVSSYLESNTAGDPYTDYQKASGSIDKAIKLEARDPLVAAYPVVGVGMENLIISTNEHASSDQGKTVSRATTNSKTDANTVGVSISAGYQNGFTGNITTSYSHTTDNSTAVQDSNGESWNTGLSINKGESAYINANVRYYNTGTAPMYKVTPTTNLVLDGETLATIKAQDNQIGNNLSPNETYPKKGLSPLALNTMDQFNARLIPINYDQLKKLDSGKQIKLETTQVSGNYGTKNSQGQIITEGNSWSNYISQIDSVSASIILDTGSQTFERRVAAKEQGNPEDKTPEITIGEAIKKAFSATKNGELLYFNGIPIDESCVELIFDDNTSEIIKEQLKYLDDKKIYNVKLERGMNILIKVPSYFTNFDEYNNFPASWSNIDTKNQDGLQSVANKLSGETKIIIPMSKLKPYKRYVFSGYSKDPSTSNSITVNIKSKEQKTDYLVPEKDYTKFSYEFETTGKDSSDIEITLTSSGVIFLDNLSITELNSTPEILKEPEIKVPSDQEILDAHNKYYADIKLDTNTGNTYIDGIYFEPTQTNKEALDYIQKYRVEATLQYSGFKDIGTKDKEIRNYLGDQNQPKTNYINFRSYFTSGENVMTYKKLRIYAVTPDNRELLVLSVNLEHHHHHH
Iota toxin component Ib F 683 Clostridium Perfringens NNFFDVRFFSAAWEDEDLDTDNDNIPDAYEKNGYTIKDSIAVKWNDSFAEQGYKKYVSSYLESNTAGDPYTDYQKASGSIDKAIKLEARDPLVAAYPVVGVGMENLIISTNEHASSDQGKTVSRATTNSKTDANTVGVSISAGYQNGFTGNITTSYSHTTDNSTAVQDSNGESWNTGLSINKGESAYINANVRYYNTGTAPMYKVTPTTNLVLDGETLATIKAQDNQIGNNLSPNETYPKKGLSPLALNTMDQFNARLIPINYDQLKKLDSGKQIKLETTQVSGNYGTKNSQGQIITEGNSWSNYISQIDSVSASIILDTGSQTFERRVAAKEQGNPEDKTPEITIGEAIKKAFSATKNGELLYFNGIPIDESCVELIFDDNTSEIIKEQLKYLDDKKIYNVKLERGMNILIKVPSYFTNFDEYNNFPASWSNIDTKNQDGLQSVANKLSGETKIIIPMSKLKPYKRYVFSGYSKDPSTSNSITVNIKSKEQKTDYLVPEKDYTKFSYEFETTGKDSSDIEITLTSSGVIFLDNLSITELNSTPEILKEPEIKVPSDQEILDAHNKYYADIKLDTNTGNTYIDGIYFEPTQTNKEALDYIQKYRVEATLQYSGFKDIGTKDKEIRNYLGDQNQPKTNYINFRSYFTSGENVMTYKKLRIYAVTPDNRELLVLSVNLEHHHHHH
Iota toxin component Ib G 683 Clostridium Perfringens NNFFDVRFFSAAWEDEDLDTDNDNIPDAYEKNGYTIKDSIAVKWNDSFAEQGYKKYVSSYLESNTAGDPYTDYQKASGSIDKAIKLEARDPLVAAYPVVGVGMENLIISTNEHASSDQGKTVSRATTNSKTDANTVGVSISAGYQNGFTGNITTSYSHTTDNSTAVQDSNGESWNTGLSINKGESAYINANVRYYNTGTAPMYKVTPTTNLVLDGETLATIKAQDNQIGNNLSPNETYPKKGLSPLALNTMDQFNARLIPINYDQLKKLDSGKQIKLETTQVSGNYGTKNSQGQIITEGNSWSNYISQIDSVSASIILDTGSQTFERRVAAKEQGNPEDKTPEITIGEAIKKAFSATKNGELLYFNGIPIDESCVELIFDDNTSEIIKEQLKYLDDKKIYNVKLERGMNILIKVPSYFTNFDEYNNFPASWSNIDTKNQDGLQSVANKLSGETKIIIPMSKLKPYKRYVFSGYSKDPSTSNSITVNIKSKEQKTDYLVPEKDYTKFSYEFETTGKDSSDIEITLTSSGVIFLDNLSITELNSTPEILKEPEIKVPSDQEILDAHNKYYADIKLDTNTGNTYIDGIYFEPTQTNKEALDYIQKYRVEATLQYSGFKDIGTKDKEIRNYLGDQNQPKTNYINFRSYFTSGENVMTYKKLRIYAVTPDNRELLVLSVNLEHHHHHH
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-09-30
Deposition Author(s): Noda, T. , Sugita, Y. , Tsuge, H. , Yamada, T. , Yoshida, T.