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9JPB

Cryo-em structure of a tri-heme cytochrome-associated rc-lh1 complex from a marine photoheterotrophic bacterium, purified with edta-containing solutions

PDB DOI: 10.2210/pdb9jpb/pdb

Classification: PHOTOSYNTHESIS
Organism(s): Dinoroseobacter Shibae Dfl 12 = Dsm 16493

Deposited: 2024-09-25
Deposition Author(s): Chen, J.H. , Gu, J. , Liu, Y. , Wang, W. , Zhang, X. , Zheng, Q.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.8 Å

9jpb
Literature

Cryo-em structure of a tri-heme cytochrome-associated rc-lh1 complex from a marine photoheterotrophic bacterium, purified with edta-containing solutions

Chen, J.H. , Gu, J. , Liu, Y. , Wang, W. , Zhang, X. , Zheng, Q.

Primary Citation of Related Structures: 9JPB


Proteins
Molecule Chains Sequence Length Organism Sequence
Antenna pigment protein beta chain P 49 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MADKSDLSFTGLTDEQAQELHSVYMSGLWLFSAVAVVAHLATFIWRPWF
Antenna pigment protein beta chain V 49 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MADKSDLSFTGLTDEQAQELHSVYMSGLWLFSAVAVVAHLATFIWRPWF
Antenna pigment protein beta chain S 49 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MADKSDLSFTGLTDEQAQELHSVYMSGLWLFSAVAVVAHLATFIWRPWF
Antenna pigment protein beta chain T 49 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MADKSDLSFTGLTDEQAQELHSVYMSGLWLFSAVAVVAHLATFIWRPWF
Antenna pigment protein beta chain Q 49 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MADKSDLSFTGLTDEQAQELHSVYMSGLWLFSAVAVVAHLATFIWRPWF
Antenna pigment protein beta chain R 49 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MADKSDLSFTGLTDEQAQELHSVYMSGLWLFSAVAVVAHLATFIWRPWF
Antenna pigment protein alpha chain 1 53 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MSKFYKIWLIFDPRRVFVAQGVFLFLLAAMIHLVLLSTEHFNWFELAAANAAM
Antenna pigment protein beta chain N 49 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MADKSDLSFTGLTDEQAQELHSVYMSGLWLFSAVAVVAHLATFIWRPWF
Antenna pigment protein beta chain K 49 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MADKSDLSFTGLTDEQAQELHSVYMSGLWLFSAVAVVAHLATFIWRPWF
Antenna pigment protein beta chain J 49 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MADKSDLSFTGLTDEQAQELHSVYMSGLWLFSAVAVVAHLATFIWRPWF
Antenna pigment protein beta chain I 49 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MADKSDLSFTGLTDEQAQELHSVYMSGLWLFSAVAVVAHLATFIWRPWF
Antenna pigment protein beta chain G 49 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MADKSDLSFTGLTDEQAQELHSVYMSGLWLFSAVAVVAHLATFIWRPWF
Antenna pigment protein beta chain F 49 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MADKSDLSFTGLTDEQAQELHSVYMSGLWLFSAVAVVAHLATFIWRPWF
Antenna pigment protein beta chain E 49 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MADKSDLSFTGLTDEQAQELHSVYMSGLWLFSAVAVVAHLATFIWRPWF
Antenna pigment protein beta chain D 49 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MADKSDLSFTGLTDEQAQELHSVYMSGLWLFSAVAVVAHLATFIWRPWF
Antenna pigment protein beta chain B 49 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MADKSDLSFTGLTDEQAQELHSVYMSGLWLFSAVAVVAHLATFIWRPWF
Antenna pigment protein beta chain A 49 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MADKSDLSFTGLTDEQAQELHSVYMSGLWLFSAVAVVAHLATFIWRPWF
Reaction center protein O chain O 239 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MATQRKDMTCTITCWGIGVLLGIMTTVGLMVVGWSFLQGAFMGVLAWLIVGGVLAVAVCGETGRPKDNAEQIRAEMAAARERVRGATPGITPKPAPSVPADVRSKVQPSAALAGEAELAGRKGSWSYDSGAGHASGAGHDAGTDAAKPATLTAARDGKADDLKKIKGVGPKLEEMLHSMGFYHFDQVASWSEQELAWVDENLEGFKGRASRDEWVAQAKLLAQGGETEFSKRVDGGDVY
Antenna pigment protein beta chain 2 49 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MADKSDLSFTGLTDEQAQELHSVYMSGLWLFSAVAVVAHLATFIWRPWF
Reaction center protein M chain M 330 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MPEYQNIFTQVQVQGPAELGVDNENNLTEERTTGTGFSQLIGWIGNAQLGPIYLGWFGIISLVTGTLWFNIVGFNMLSQVGYSIPEFIRQLFWLALEPPSPEYGLRMPPLDDGGWFIIASFFLLVSVISWWLRSYQLAEMHKMGKHVAWAFAAAIWLFLVLGLFRPILMGSWSEAVPYGIFPHLDWTTAFSIRYGNLYYNPFHALSIVFLYGSVLLFAMHGATILAVTRFGGDRELEQIYDRGTASERAGLFWRWTMGFNATMEGIHRWAWWFAVLTPITGGIGILLTGTVVDNWFLWAVEHNFAPDYTQDYGYEAYTTYDGFLGREEGN
Reaction center protein L chain L 279 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MALLSFERKYRVRGGTLIGGDLFDFWVGPFYVGFFGVTTAFFALLGTILIFWGASQQGTFNPWLINIAPPDLSYGLGMAPLMEGGLWQIITICAIGAFVSWALREVEICRKLGMGYHVPFAFSVAIFAYVTLVVFRPLLMGAWGHGFPYGIWSHLDWVSNTGYAYLHFHYNPAHMIAVTFFFTTTLALALHGALVLSAANPPKGEEVKGPDNEDTFFRDFIGYSIGTLGIHRVGLLLALNAGFWSAVCIIISGPVWTKGWPEWWNWWLEMPIWPSQVDC
Reaction center protein H chain H 256 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MEETFFGNFDLASLSLWLFYGFFALLIYYLQTENMREGYPLEDDDGNTAANQGPFPLPKEKTFKLQHGRGELTLPGEDVQRRDNLALRKTAHGNGFPMEPTGDPMLDGVGPASWSKRRDVPELDAHGHPKIVPMSAAEGFGVSAGTDPRGLPVMAGDGEIVGLVSDMWIDEAEQLVRYLEIELDPEWGDGKRLVQREMVRIKSDRVKVRSIYGKHFKNVPKTKSPNQVTLLEEDKIMAYYAGGTLYADESRLEPQL
Photosynthetic reaction center cytochrome c subunit C 360 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MLPKWFDEWNSKNPTDIYKPAIVVGVAGGAVFAAALLVSWGQPLATDSMQTGPRGTGMSVPEFVSDLDTPDPTIEVFLASTSDPVIPEEGAQTAGEAYENVDPVLADLTVENYDRLLAAMRSWTGIPDLLEDPDHYQSKVAINMIQMNQTINEEWAGHVYANAEVGVTCFTCHRGQAVPSEVWYRIDPVTENTSGWASVQNRATSLSQFTSLPSDALYQYLLNYEQIAVHDLESRVETLPGDPTWQNTERTYSLMNYFSNSLGRNCVFCHNSRAFYDPAQHTPQWATAMLGISMVQELNNEWIVPIGEAHLPPERLGPVYNDVPKLACKTCHKGYQQPLQGLNVVADWPELATTEGPFYD
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-09-25
Deposition Author(s): Chen, J.H. , Gu, J. , Liu, Y. , Wang, W. , Zhang, X. , Zheng, Q.