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9JH8

Cryo-em structure of cpago_gdna-tg_ssdna monomeric ternary complex

PDB DOI: 10.2210/pdb9jh8/pdb

Classification: DNA BINDING PROTEIN/DNA
Organism(s): Clostridium Perfringens , Synthetic Construct

Deposited: 2024-09-09
Deposition Author(s): Li, S. , Liu, Y. , Zhang, K.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.81 Å

9jh8
Literature

Cryo-em structure of cpago_gdna-tg_ssdna monomeric ternary complex

Li, S. , Liu, Y. , Zhang, K.

Primary Citation of Related Structures: 9JH8


Proteins
Molecule Chains Sequence Length Organism Sequence
Clostridium perfringens Argonaute (CpAgo) A 751 Clostridium Perfringens , Synthetic Construct MVGGYKVSNLTVEAFEGIGSVNPMLFYQYKVTGKGKYDNVYKIIKSARYKMHSKNRFKPVFIKDDKLYTLEKLPDIEDLDFANINFVKSEVLSIEDNMSIYGEVVEYYINLKLKKVKVLGKYPKYRINYSKEILSNTLLTRELKDEFKKSNKGFNLKRKFRISPVVNKMGKVILYLSCSADFSTNKNIYEMLKEGLEVEGLAVKSEWSNISGNLVIESVLETKISEPTSLGQSLIDYYKNNNQGYRVKDFTDEDLNANIVNVRGNKKIYMYIPHALKPIITREYLAKNDPEFSKEIEQLIKMNMNYRYETLKSFVNDIGVIEELNNLSFKNKYYEDVKLLGYSSGKIDEPVLMGAKGIIKNKMQIFSNGFYKLPEGKVRFGVLYPKEFDGVSRKAIRAIYDFSKEGKYHGESNKYIAEHLINVEFNPKECIFEGYELGDITEYKKAALKLNNYNNVDFVIAIVPNMSDEEIENSYNPFKKIWAELNLPSQMISVKTAEIFANSRDNTALYYLHNIVLGILGKIGGIPWVVKDMKGDVDCFVGLDVGTREKGIHYPACSVVFDKYGKLINYYKPNIPQNGEKINTEILQEIFDKVLISYEEENGAYPKNIVIHRAGFSREDLDWYENYFGKKNIKFNIIEVKKSTPLKIASINEGNITNPEKGSYILRGNKAYMVTTDIKENLGSPKPLKIEKSYGDIDMLTALSQIYALTQIHVGATKSLRLPITTGYADKICKAIEFIPQGRVDNRLFFL

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*TP*AP*GP*T)-3') c 21 NA TGAGGTAGTAGGTTGTATAGT
DNA (5'-D(*AP*CP*T*AP*TP*AP*CP*AP*AP*CP*CP*TP*AP*CP*TP*AP*CP*CP*TP*CP*G)-3') e 21 NA ACTATACAACCTACTACCTCG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-09-09
Deposition Author(s): Li, S. , Liu, Y. , Zhang, K.