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9J8W
Cryo-em structure of ncp-uv-ddb complex containing cpd
PDB DOI: 10.2210/pdb9j8w/pdb
Classification: DNA BINDING PROTEIN Organism(s): Homo Sapiens , Synthetic Construct
Deposited: 2024-08-21 Deposition Author(s): Hashimoto, K. , Iwai, S. , Kurumizaka, H. , Matsumoto, S. , Negishi, L. , Ogasawara, M. , Sugasawa, K. , Tachibana, H. , Takizawa, Y. , Xu, W. , Yamamoto, J.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.38 Å
Cryo-em structure of ncp-uv-ddb complex containing cpd
Hashimoto, K. , Iwai, S. , Kurumizaka, H. , Matsumoto, S. , Negishi, L. , Ogasawara, M. , Sugasawa, K. , Tachibana, H. , Takizawa, Y. , Xu, W. , Yamamoto, J.
Primary Citation of Related Structures: 9J8W
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Histone H3.1 | A | 136 | Homo Sapiens , Synthetic Construct | MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
| Histone H3.1 | E | 136 | Homo Sapiens , Synthetic Construct | MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
| Histone H4 | B | 103 | Homo Sapiens , Synthetic Construct | MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
| Histone H4 | F | 103 | Homo Sapiens , Synthetic Construct | MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
| Histone H2A type 1-B/E | C | 130 | Homo Sapiens , Synthetic Construct | MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK |
| Histone H2A type 1-B/E | G | 130 | Homo Sapiens , Synthetic Construct | MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK |
| Histone H2B type 1-J | D | 126 | Homo Sapiens , Synthetic Construct | MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK |
| Histone H2B type 1-J | H | 126 | Homo Sapiens , Synthetic Construct | MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK |
| DNA damage-binding protein 2 | L | 427 | Homo Sapiens , Synthetic Construct | MAPKKRPETQKTSEIVLRPRNKRSRSPLELEPEAKKLCAKGSGPSRRCDSDCLWVGLAGPQILPPCRSIVRTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQEEARTRK |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Human alpha-satellite DNA (145-MER) | i | 145 | NA | ATCAATATCCACCTGCAGATTCTACCAAAAGTGTATTTGGAAACTGCTCCATCAAAAGGCATGTTCAGCTGGTTCAGCTGAACATGCCTTTTGATGGAGCAGTTTCCAAATACACTTTTGGTAGAATCTGCAGGTGGATATTGAT |
| Human alpha-satellite DNA (145-MER) with CPD at position 95 | j | 144 | NA | ATCAATATCCACCTGCAGATTCTACCAAAAGTGTATTTGGAAACTGCTCCATCAAAAGGCATGTTCAGCTGAACCAGCTGAACATGCCTTTTGATGAGCAGTTTCCAAATACACTTTTGGTAGAATCTGCAGGTGGATATTGAT |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2024-08-21 Deposition Author(s): Hashimoto, K. , Iwai, S. , Kurumizaka, H. , Matsumoto, S. , Negishi, L. , Ogasawara, M. , Sugasawa, K. , Tachibana, H. , Takizawa, Y. , Xu, W. , Yamamoto, J.