Cryo-em structure of baf-lamin a/c igf-nucleosome complex (high mobility complex)
PDB DOI: 10.2210/pdb9j8m/pdb
Classification: NUCLEAR PROTEIN Organism(s): Homo Sapiens , Synthetic Construct
Deposited: 2024-08-21 Deposition Author(s): Horikoshi, N. , Kurumizaka, H. , Miyake, R. , Ogasawara, M. , Sogawa-Fujiwara, C. , Takizawa, Y.
Method: ELECTRON MICROSCOPY Resolution: 3.82 Å
Cryo-em structure of baf-lamin a/c igf-nucleosome complex (high mobility complex)
Horikoshi, N. , Kurumizaka, H. , Miyake, R. , Ogasawara, M. , Sogawa-Fujiwara, C. , Takizawa, Y.
Primary Citation of Related Structures: 9J8M
Proteins | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
Histone H3.1 | A | 139 | Homo Sapiens , Synthetic Construct | GSHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
Histone H3.1 | E | 139 | Homo Sapiens , Synthetic Construct | GSHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
Histone H4 | B | 106 | Homo Sapiens , Synthetic Construct | GSHMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
Histone H4 | F | 106 | Homo Sapiens , Synthetic Construct | GSHMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
Histone H2A type 1-B/E | C | 133 | Homo Sapiens , Synthetic Construct | GSHMSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK |
Histone H2A type 1-B/E | G | 133 | Homo Sapiens , Synthetic Construct | GSHMSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK |
Histone H2B type 1-J | D | 129 | Homo Sapiens , Synthetic Construct | GSHMPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK |
Histone H2B type 1-J | H | 129 | Homo Sapiens , Synthetic Construct | GSHMPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK |
Barrier-to-autointegration factor | K | 93 | Homo Sapiens , Synthetic Construct | GSHMMTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFREWLKDTCGANAKQSRDCFGCLREWCDAFL |
Barrier-to-autointegration factor | L | 93 | Homo Sapiens , Synthetic Construct | GSHMMTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFREWLKDTCGANAKQSRDCFGCLREWCDAFL |
Lamin-A/C | M | 158 | Homo Sapiens , Synthetic Construct | SHGGGSVTKKRKLESTESRSSFSQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVTIWAAGAGATHSPPTDLVWKAQNTWGCGNSLRTALINSTGEEVAMRKLVRSVTVVEDDEDEDGDDLLHHHH |
Nucleic Acids / Hybrid | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
DNA (193-MER) | i | 193 | NA | ATCGGACCCTATCGCGAGCCAGGCCTGAGAATCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCAGGCCTTGTGTCGCGAAATTCATAGAT |
DNA (193-MER) | j | 193 | NA | ATCTATGAATTTCGCGACACAAGGCCTGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGATTCTCAGGCCTGGCTCGCGATAGGGTCCGAT |
Method: ELECTRON MICROSCOPY
Deposited Date: 2024-08-21 Deposition Author(s): Horikoshi, N. , Kurumizaka, H. , Miyake, R. , Ogasawara, M. , Sogawa-Fujiwara, C. , Takizawa, Y.