PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9IX4

Cryo-em structure of lactobacillus casei ddmd dimer bound with dna

PDB DOI: 10.2210/pdb9ix4/pdb

Classification: DNA BINDING PROTEIN/DNA
Organism(s): Lacticaseibacillus , Synthetic Construct

Deposited: 2024-07-26
Deposition Author(s): Chen, M.R. , Huang, P.P. , Xiao, Y.B.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.96 Å

9ix4
Literature

Cryo-em structure of lactobacillus casei ddmd dimer bound with dna

Chen, M.R. , Huang, P.P. , Xiao, Y.B.

Primary Citation of Related Structures: 9IX4


Proteins
Molecule Chains Sequence Length Organism Sequence
DdmD A 1192 Lacticaseibacillus , Synthetic Construct MQVSDFSGMIKKLQSQSPEHALMLLNAPTGTGKSYTIIRALCRYAIKHENFRAFFVTDQKKNLKEQDFEVAWREESGAVHKAFSERVAVVRSLEDTVNKLINDWDRQQIPDLYRSSPIFKKSLENLGNAFKSFGMMKENEFDLKNAWTMLSRAEYQVRRAMITILADKAHVKLKNISEAGASAFKLDSISKGKIREFVSKQPKADSKWLNETYPTFDLEKKQIIILTTAKFIKSYTPFFEKRSKAFRYSPILKDALVVLDEFDSTKKQILESAIDEALKIQADLNSLFVDLSKGLNKVNEGQLPAKLGKSFTFRDAFKEILNDAEQLTAEFKLDFLYKMEEQGRDSGFVMRVPQTNWVSVGKPWNAYFDEELRQVVLGRQPRNDLNFQRMLPRISVFLKGATKFILNRAREYQVSENQKLSSLDDAMTIEDACFSIYAALGLSKSQAKILFSLGHDFSSPTKVKTTYHAHSGRRFQQRGLSLFQFTNDPQHDLQTKINACFFNETPERYLLNLLSKANVLGLSATATLPTVLDNYDLGYLREMLGPRLLDGVHYLSDTTIKEFDFESRYAKQKIEVKVETGIVDRFFSEILPKNNQKIDNKKIWELDAELAKLVNCIPASEQSRIDKKYFARRYLNLFNSFVIFLTDPSMTSFLGLQSLLPGADGRMDENYIKETFTTLKDLVGGQDGVNTELRIVSSRNQEGIQEQLSEALNLVSQGGKRVYILSAYQTIGIGQNLQHEMNEFEREQAANIAPKGVSKSDRRQHTIDLAGMYLGEVTHILSSNLPFRMDAAGLRSIIEQEYLFDANEINIKYLNKYLKGLQHQRLERHPEYARSLYVSYSRTIIQALGRMNRSFNKMPLIRLVMPVNVLQMVTDSGIDVEKTSQEYRCLLTAAKDWERDFEKPSAEIAKQNATFNTFRDYRFVLAYLQTSKSWAQIYHDTRWFYVRHPTVSDKDLKSSQVFQQRDDEFGLQYLLNEHLDVSYEVKPINHDNGQFDFSGTGMEVSAEAAGLVAMCRYPGLKEAFESLDIPTKWEPNERILNPAQFYNYRGLLGEVSGQFIFQNEWSLKLADFGKPENYELFDFHWEGKVVIDFKNWRDAPDVDTKAERQKVEAKLAKLQANTQREWRVIIINILASNQTRPVMTVDGKILEISGLIDHQGKFLLTPEQKLNVWRFLNGTAVNDSNDTIRLQN
DdmD B 1192 Lacticaseibacillus , Synthetic Construct MQVSDFSGMIKKLQSQSPEHALMLLNAPTGTGKSYTIIRALCRYAIKHENFRAFFVTDQKKNLKEQDFEVAWREESGAVHKAFSERVAVVRSLEDTVNKLINDWDRQQIPDLYRSSPIFKKSLENLGNAFKSFGMMKENEFDLKNAWTMLSRAEYQVRRAMITILADKAHVKLKNISEAGASAFKLDSISKGKIREFVSKQPKADSKWLNETYPTFDLEKKQIIILTTAKFIKSYTPFFEKRSKAFRYSPILKDALVVLDEFDSTKKQILESAIDEALKIQADLNSLFVDLSKGLNKVNEGQLPAKLGKSFTFRDAFKEILNDAEQLTAEFKLDFLYKMEEQGRDSGFVMRVPQTNWVSVGKPWNAYFDEELRQVVLGRQPRNDLNFQRMLPRISVFLKGATKFILNRAREYQVSENQKLSSLDDAMTIEDACFSIYAALGLSKSQAKILFSLGHDFSSPTKVKTTYHAHSGRRFQQRGLSLFQFTNDPQHDLQTKINACFFNETPERYLLNLLSKANVLGLSATATLPTVLDNYDLGYLREMLGPRLLDGVHYLSDTTIKEFDFESRYAKQKIEVKVETGIVDRFFSEILPKNNQKIDNKKIWELDAELAKLVNCIPASEQSRIDKKYFARRYLNLFNSFVIFLTDPSMTSFLGLQSLLPGADGRMDENYIKETFTTLKDLVGGQDGVNTELRIVSSRNQEGIQEQLSEALNLVSQGGKRVYILSAYQTIGIGQNLQHEMNEFEREQAANIAPKGVSKSDRRQHTIDLAGMYLGEVTHILSSNLPFRMDAAGLRSIIEQEYLFDANEINIKYLNKYLKGLQHQRLERHPEYARSLYVSYSRTIIQALGRMNRSFNKMPLIRLVMPVNVLQMVTDSGIDVEKTSQEYRCLLTAAKDWERDFEKPSAEIAKQNATFNTFRDYRFVLAYLQTSKSWAQIYHDTRWFYVRHPTVSDKDLKSSQVFQQRDDEFGLQYLLNEHLDVSYEVKPINHDNGQFDFSGTGMEVSAEAAGLVAMCRYPGLKEAFESLDIPTKWEPNERILNPAQFYNYRGLLGEVSGQFIFQNEWSLKLADFGKPENYELFDFHWEGKVVIDFKNWRDAPDVDTKAERQKVEAKLAKLQANTQREWRVIIINILASNQTRPVMTVDGKILEISGLIDHQGKFLLTPEQKLNVWRFLNGTAVNDSNDTIRLQN

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*TP*AP*TP*GP*AP*GP*TP*AP*TP*AP*TP*CP*C)-3') c 13 NA TATGAGTATATCC
DNA (5'-D(P*AP*TP*GP*AP*GP*TP*AP*TP*AP*TP*CP*C)-3') d 12 NA ATGAGTATATCC
DNA (5'-D(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') e 10 NA AAAAAAAAAA
DNA (5'-D(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') f 10 NA AAAAAAAAAA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-07-26
Deposition Author(s): Chen, M.R. , Huang, P.P. , Xiao, Y.B.