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9IW3

Cryo-em structure of lactobacillus casei ddme bound with guide and target

PDB DOI: 10.2210/pdb9iw3/pdb

Classification: DNA BINDING PROTEIN/DNA
Organism(s): Lacticaseibacillus , Synthetic Construct

Deposited: 2024-07-25
Deposition Author(s): Chen, M.R. , Huang, P.P. , Xiao, Y.B.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.58 Å

9iw3
Literature

Cryo-em structure of lactobacillus casei ddme bound with guide and target

Chen, M.R. , Huang, P.P. , Xiao, Y.B.

Primary Citation of Related Structures: 9IW3


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (25-MER) c 25 NA AGATTAGAGCCGTCACGTATCAAGT
DNA (5'-D(P*TP*GP*AP*CP*GP*GP*CP*TP*CP*TP*AP*AP*TP*CP*T)-3') b 15 NA TGACGGCTCTAATCT
DNA (5'-D(P*CP*TP*TP*GP*AP*TP*AP*CP*GP*AP*C)-3') d 11 NA CTTGATACGAC

Proteins
Molecule Chains Sequence Length Organism Sequence
DdmE A 715 Lacticaseibacillus , Synthetic Construct MEQQSMIRTTRLDYKINMMQLQADFKFLVVKIIDRSAFKDYNKLLASWSPEAVTSIRGRYKKGDYLMMFRQLPAIPTIAGLELHEILLEDMGEFKIYPNHLLQLLLNQQSANEKSLLEPCKTPELLISGEEWYREFRDMRQQYYALKLKVNWQQDLEMSVQTFTQVTEFQWDKQIYQFDEKRGRFQLCYQPSPGIYFVQGNHSANRNYIDFLSLQNKSSFYKSKVGVVQLVLDNLNLNAEKYLLRPVTFHKSLVEHSSRLKLSKRETIWQQLAGSSLNIYAQVNDRLSQELADQLADHLIRSQLVRKNSVHVVRSQKIQSGFNIQVIRDVRGRAAEDGYEVAKNDQIVQHLTVENFGHYQEGDKEITWKPKVSGKHHDPARDVAIVKLIQELCIKRDLANGKLKTVEPKLASLTQPLEFYYFAFLKKSFDPEVMVIKLAFTPEMELRFSKKKVRLNALTSDDEYTQVCKRVFDSLAAPKFYSAWDSVDCVVRSGNKQLLIQRLNRTIMPDGKQIRKQLELNRPDKTLWRDKVVEELGELRPMVSGDSDYVAAYEQLQALVTGMRPSFPLKDLDEAARKAGLNPKRRDMRQVNQFLTENATFTLKTTLQRELPDSPLAGMKWIGLTRIEEGEGHFNTFYFVGSDKSLKPVVNRAVTLRRLLPLAGDAGIIDELFPKLAAMMSVEFVRSGQYTVVPYPVKYLREYWYSILRQHPEYR
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-07-25
Deposition Author(s): Chen, M.R. , Huang, P.P. , Xiao, Y.B.