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9IU6

Cryo-em structure of the large serine recombinase bxb1 in complex with attp and attb (ca/ca cdn) in the intermediate-strand exchange state 1

PDB DOI: 10.2210/pdb9iu6/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Mycobacterium Phage Bxb1 , Synthetic Construct

Deposited: 2024-07-20
Deposition Author(s): Hiraizumi, M. , Nishimasu, H. , Soma, T. , Yamashita, K.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.97 Å

9iu6
Literature

Cryo-em structure of the large serine recombinase bxb1 in complex with attp and attb (ca/ca cdn) in the intermediate-strand exchange state 1

Hiraizumi, M. , Nishimasu, H. , Soma, T. , Yamashita, K.

Primary Citation of Related Structures: 9IU6


Proteins
Molecule Chains Sequence Length Organism Sequence
Integrase A 500 Mycobacterium Phage Bxb1 , Synthetic Construct MRALVVIRLSRVTDATTSPERQLESCQQLCAQRGWDVVGVAEDLDVSGAVDPFDRKRRPNLARWLAFEEQPFDVIVAYRVDRLTRSIRHLQQLVHWAEDHKKLVVSATEAHFDTTTPFAAVVIALMGTVAQMELEAIKERNRSAAHFNIRAGKYRGSLPPWGYLPTRVDGEWRLVPDPVQRERILEVYHRVVDNHEPLHLVAHDLNRRGVLSPKDYFAQLQGREPQGREWSATALKRSMISEAMLGYATLNGKTVRDDDGAPLVRAEPILTREQLEALRAELVKTSRAKPAVSTPSLLLRVLFCAVCGEPAYKFAGGGRKHPRYRCRSMGFPKHCGNGTVAMAEWDAFCEEQVLDLLGDAERLEKVWVAGSDSAVELAEVNAELVDLTSLIGSPAYRAGSPQREALDARIAALAARQEELEGLEARPSGWEWRETGQRFGDWWREQDTAAKNTWLRSMNVRLTFDVRGGLTRTIDFGDLQEYEQHLRLGSVVERLHTGMS
Integrase B 500 Mycobacterium Phage Bxb1 , Synthetic Construct MRALVVIRLSRVTDATTSPERQLESCQQLCAQRGWDVVGVAEDLDVSGAVDPFDRKRRPNLARWLAFEEQPFDVIVAYRVDRLTRSIRHLQQLVHWAEDHKKLVVSATEAHFDTTTPFAAVVIALMGTVAQMELEAIKERNRSAAHFNIRAGKYRGSLPPWGYLPTRVDGEWRLVPDPVQRERILEVYHRVVDNHEPLHLVAHDLNRRGVLSPKDYFAQLQGREPQGREWSATALKRSMISEAMLGYATLNGKTVRDDDGAPLVRAEPILTREQLEALRAELVKTSRAKPAVSTPSLLLRVLFCAVCGEPAYKFAGGGRKHPRYRCRSMGFPKHCGNGTVAMAEWDAFCEEQVLDLLGDAERLEKVWVAGSDSAVELAEVNAELVDLTSLIGSPAYRAGSPQREALDARIAALAARQEELEGLEARPSGWEWRETGQRFGDWWREQDTAAKNTWLRSMNVRLTFDVRGGLTRTIDFGDLQEYEQHLRLGSVVERLHTGMS
Integrase C 500 Mycobacterium Phage Bxb1 , Synthetic Construct MRALVVIRLSRVTDATTSPERQLESCQQLCAQRGWDVVGVAEDLDVSGAVDPFDRKRRPNLARWLAFEEQPFDVIVAYRVDRLTRSIRHLQQLVHWAEDHKKLVVSATEAHFDTTTPFAAVVIALMGTVAQMELEAIKERNRSAAHFNIRAGKYRGSLPPWGYLPTRVDGEWRLVPDPVQRERILEVYHRVVDNHEPLHLVAHDLNRRGVLSPKDYFAQLQGREPQGREWSATALKRSMISEAMLGYATLNGKTVRDDDGAPLVRAEPILTREQLEALRAELVKTSRAKPAVSTPSLLLRVLFCAVCGEPAYKFAGGGRKHPRYRCRSMGFPKHCGNGTVAMAEWDAFCEEQVLDLLGDAERLEKVWVAGSDSAVELAEVNAELVDLTSLIGSPAYRAGSPQREALDARIAALAARQEELEGLEARPSGWEWRETGQRFGDWWREQDTAAKNTWLRSMNVRLTFDVRGGLTRTIDFGDLQEYEQHLRLGSVVERLHTGMS
Integrase D 500 Mycobacterium Phage Bxb1 , Synthetic Construct MRALVVIRLSRVTDATTSPERQLESCQQLCAQRGWDVVGVAEDLDVSGAVDPFDRKRRPNLARWLAFEEQPFDVIVAYRVDRLTRSIRHLQQLVHWAEDHKKLVVSATEAHFDTTTPFAAVVIALMGTVAQMELEAIKERNRSAAHFNIRAGKYRGSLPPWGYLPTRVDGEWRLVPDPVQRERILEVYHRVVDNHEPLHLVAHDLNRRGVLSPKDYFAQLQGREPQGREWSATALKRSMISEAMLGYATLNGKTVRDDDGAPLVRAEPILTREQLEALRAELVKTSRAKPAVSTPSLLLRVLFCAVCGEPAYKFAGGGRKHPRYRCRSMGFPKHCGNGTVAMAEWDAFCEEQVLDLLGDAERLEKVWVAGSDSAVELAEVNAELVDLTSLIGSPAYRAGSPQREALDARIAALAARQEELEGLEARPSGWEWRETGQRFGDWWREQDTAAKNTWLRSMNVRLTFDVRGGLTRTIDFGDLQEYEQHLRLGSVVERLHTGMS

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
attP-L e1 27 NA GTGGTTTGTCTGGTCAACCACCGCGGT
attP-R e2 25 NA CTCAGTGGTGTACGGTACAAACCCA
attP-L f1 25 NA CGCGGTGGTTGACCAGACAAACCAC
attP-R f2 27 NA TGGGTTTGTACCGTACACCACTGAGAC
attB-L g1 24 NA GGCCGGCTTGTCGACGACGGCGCA
attB-R g2 22 NA CTCCGTCGTCAGGATCATCCGG
attB-L h1 22 NA CGCCGTCGTCGACAAGCCGGCC
attB-R h2 24 NA CCGGATGATCCTGACGACGGAGAC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-07-20
Deposition Author(s): Hiraizumi, M. , Nishimasu, H. , Soma, T. , Yamashita, K.