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9IRF

Cryo-em structure of csy1-4 with crrna

PDB DOI: 10.2210/pdb9irf/pdb

Classification: RNA BINDING PROTEIN/RNA
Organism(s): Pectobacterium Atrosepticum Scri1043

Deposited: 2024-07-15
Deposition Author(s): Cui, S. , Gao, X. , Shang, K. , Zhu, H. , Zhu, K.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.8 Å

Literature

Cryo-em structure of csy1-4 with crrna

Cui, S. , Gao, X. , Shang, K. , Zhu, H. , Zhu, K.

Primary Citation of Related Structures: 9IRF


Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR-associated protein Csy2 A 310 Pectobacterium Atrosepticum Scri1043 MSTLIILRRIQVENANAIAGLTYGFPAITHFLGFTHALSRKLQASHGLTLEGCGVVSHQHQLHAYGSSWERSFALTRNPLTKEAKTAAFNEEGRMHMTVSLLIRCDGQIPADTTALCEHLKQQAQCQRLAGGTVIDIERVTVQSLPVDEAETRGVMRRLLPGFVLRDRTSLLHRHFQTLQQAKPQAEMIDAWLDFAALKMQAERDPSDETVQWKYLPKPGDGGFLTPLMIGYRAISPLYAPGEVDKTRDPHTPFCFAEAAYGIGEWQGAHRISDISQILWEYDYQNGDYHCRQVADTHSVAEDTSYEFDY
CRISPR-associated endonuclease Cas6f/Csy4 B 184 Pectobacterium Atrosepticum Scri1043 MDHYIDIRVQPDPEFTASQLLNALFAKLHRVLGQLANGKIGISFPEVGKTLGECLRLHGTEDALSTLEKTSWLKGLRDYTQVSECKVVPNGVKFRTVRRVQLKSSAERLRRRSVSKGWLTAAEAAARIPDAVEKRSALPFVQIKSLSNGQMFFVFVEHGPLQNAPTAGRFSSYGLSTEATVPWF
CRISPR-associated protein Csy3 C 337 Pectobacterium Atrosepticum Scri1043 MAKAATTLKTASVLAFERKLANSDALMYAGNWAQQDNWTAIAIQEKSVRGTISNRLKNALTSDPAKLDAEIQKANLQKVDVAALPFGADTLKIVFTLRVLGNLAQPSVCNDQDYQTALGDIITGYAQEQGFSTLAARYAENIANGRFLWRNRVGAEAIRVVVTKKGERSWEFNGEDYSLRQFSQPAGDLAALTQAIEKGLAGDASALFTVEAYVQLGNGQEVFPSQELVLDEKARNGKSKILYQVNDVAAIHSQKIGNALRTIDDWYPAADEAGPIAVEPYGSVTSRGKAYRQPREKMDFYTLLDNWVIKGDVPMPEQQHYVIATLIRGGVFGEKGE
CRISPR-associated protein Csy3 D 337 Pectobacterium Atrosepticum Scri1043 MAKAATTLKTASVLAFERKLANSDALMYAGNWAQQDNWTAIAIQEKSVRGTISNRLKNALTSDPAKLDAEIQKANLQKVDVAALPFGADTLKIVFTLRVLGNLAQPSVCNDQDYQTALGDIITGYAQEQGFSTLAARYAENIANGRFLWRNRVGAEAIRVVVTKKGERSWEFNGEDYSLRQFSQPAGDLAALTQAIEKGLAGDASALFTVEAYVQLGNGQEVFPSQELVLDEKARNGKSKILYQVNDVAAIHSQKIGNALRTIDDWYPAADEAGPIAVEPYGSVTSRGKAYRQPREKMDFYTLLDNWVIKGDVPMPEQQHYVIATLIRGGVFGEKGE
CRISPR-associated protein Csy3 E 337 Pectobacterium Atrosepticum Scri1043 MAKAATTLKTASVLAFERKLANSDALMYAGNWAQQDNWTAIAIQEKSVRGTISNRLKNALTSDPAKLDAEIQKANLQKVDVAALPFGADTLKIVFTLRVLGNLAQPSVCNDQDYQTALGDIITGYAQEQGFSTLAARYAENIANGRFLWRNRVGAEAIRVVVTKKGERSWEFNGEDYSLRQFSQPAGDLAALTQAIEKGLAGDASALFTVEAYVQLGNGQEVFPSQELVLDEKARNGKSKILYQVNDVAAIHSQKIGNALRTIDDWYPAADEAGPIAVEPYGSVTSRGKAYRQPREKMDFYTLLDNWVIKGDVPMPEQQHYVIATLIRGGVFGEKGE
CRISPR-associated protein Csy3 F 337 Pectobacterium Atrosepticum Scri1043 MAKAATTLKTASVLAFERKLANSDALMYAGNWAQQDNWTAIAIQEKSVRGTISNRLKNALTSDPAKLDAEIQKANLQKVDVAALPFGADTLKIVFTLRVLGNLAQPSVCNDQDYQTALGDIITGYAQEQGFSTLAARYAENIANGRFLWRNRVGAEAIRVVVTKKGERSWEFNGEDYSLRQFSQPAGDLAALTQAIEKGLAGDASALFTVEAYVQLGNGQEVFPSQELVLDEKARNGKSKILYQVNDVAAIHSQKIGNALRTIDDWYPAADEAGPIAVEPYGSVTSRGKAYRQPREKMDFYTLLDNWVIKGDVPMPEQQHYVIATLIRGGVFGEKGE
CRISPR-associated protein Csy3 G 337 Pectobacterium Atrosepticum Scri1043 MAKAATTLKTASVLAFERKLANSDALMYAGNWAQQDNWTAIAIQEKSVRGTISNRLKNALTSDPAKLDAEIQKANLQKVDVAALPFGADTLKIVFTLRVLGNLAQPSVCNDQDYQTALGDIITGYAQEQGFSTLAARYAENIANGRFLWRNRVGAEAIRVVVTKKGERSWEFNGEDYSLRQFSQPAGDLAALTQAIEKGLAGDASALFTVEAYVQLGNGQEVFPSQELVLDEKARNGKSKILYQVNDVAAIHSQKIGNALRTIDDWYPAADEAGPIAVEPYGSVTSRGKAYRQPREKMDFYTLLDNWVIKGDVPMPEQQHYVIATLIRGGVFGEKGE
CRISPR-associated protein Csy3 H 337 Pectobacterium Atrosepticum Scri1043 MAKAATTLKTASVLAFERKLANSDALMYAGNWAQQDNWTAIAIQEKSVRGTISNRLKNALTSDPAKLDAEIQKANLQKVDVAALPFGADTLKIVFTLRVLGNLAQPSVCNDQDYQTALGDIITGYAQEQGFSTLAARYAENIANGRFLWRNRVGAEAIRVVVTKKGERSWEFNGEDYSLRQFSQPAGDLAALTQAIEKGLAGDASALFTVEAYVQLGNGQEVFPSQELVLDEKARNGKSKILYQVNDVAAIHSQKIGNALRTIDDWYPAADEAGPIAVEPYGSVTSRGKAYRQPREKMDFYTLLDNWVIKGDVPMPEQQHYVIATLIRGGVFGEKGE
CRISPR-associated protein Csy1 J 443 Pectobacterium Atrosepticum Scri1043 MRNGLPEFILSYINNRKQAKLDAFDKEAEKKRATLSGEALSVAELELAKARREIEQKHEVRNWLTDAASRAGQISLVTHALKFTHSDAKGSSVFNAETVEDATTLSTATLAQPAIDAVGNAAALDVAKLLQTEHDGDSLVAALQRGDNRALEALAENPEQLAQWLTGFQQVFTNRQPSSHKLAKQIYFPLANGEYHLLSPLYSSSLAHALHQRISAVRFGDEAKAIRQAQRTNQWHDQLSISYPNLAVQNMGGTKPQNISALNSSRSGRSYLLSSAPPQWNSIEKPPQQHESIFRPRGEVDYHTRATLAQMQRFLLSVKDVENNRDIRQQRLHYLDQLIDQLFFYVASVQNLPVGWSAESELKRAQQLWLDPYRAETDTVFRREREAGDWQQAVAYEFGRWLNRRLKHENLIFGEVERREWSTAALFKRRMREMESALKEELA

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
crRNA (87-MER) i 87 NA UUCACUGCCGUACAGGCAGCUUAGAAAGCAGAGACUAUCGAUACGGUCUGGACGGAUGCGUUCACUGCCGUACAGGCAGCUUAGAAA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-07-15
Deposition Author(s): Cui, S. , Gao, X. , Shang, K. , Zhu, H. , Zhu, K.