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9I94

Cryo-em structure of shigella flexneri lptde bound by a bicyclic peptide molecule (compound 3)

PDB DOI: 10.2210/pdb9i94/pdb

Classification: MEMBRANE PROTEIN
Organism(s): Shigella Flexneri , Synthetic Construct

Deposited: 2025-02-06
Deposition Author(s): Allyjaun, S. , Chirgadze, D.Y. , Dunbar, E. , Hardwick, S.W. , Hubbard, J. , Newman, H. , Van Den Berg, B.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.84 Å

Literature

Cryo-em structure of shigella flexneri lptde bound by a bicyclic peptide molecule (compound 3)

Allyjaun, S. , Chirgadze, D.Y. , Dunbar, E. , Hardwick, S.W. , Hubbard, J. , Newman, H. , Van Den Berg, B.

Primary Citation of Related Structures: 9I94


Proteins
Molecule Chains Sequence Length Organism Sequence
LPS-assembly protein LptD A 760 Shigella Flexneri , Synthetic Construct ADLASQCMLGVPSYDRPLVQGDTNDLPVTINADHAKGDYPDDAVFTGSVDIMQGNSRLQADEVQLHQKEAPGQPEPVRTVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGENRYTILDNGSFTSCLPGSDTWSVVGSEIIHDREEQVAEIWNARFKVGPVPIFYSPYLQLPVGDKRRSGFLIPNAKYTTTNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEFRYLSQAGAGLMELDYLPSDKVYEDEHPNDDSSRRWLFYWNHSGVMDQVWRFNVDYTKVSDPSYFNDFDNKYGSSTDGYATQKFSVGYAVQNFNATVSTKQFQVFSEQNTSSYSAEPQLDVNYYQNDVGPFDTRIYGQAVHFVNTRDDMPEATRVHLEPTINLPLSNNWGSINTEAKFLATHYQQTNLDWYNSRNTTKLDESVNRVMPQFKVDGKMVFERDMEMLAPGYTQTLEPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGLFRDRTYGGLDRIASANQVTTGVTSRIYDDAAVERFNISVGQIYYFTESRTGDDNITWENDDKTGSLVWAGDTYWRISERWGLRGGIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYHYASPEYIQATLPKYYSTAEQYKNGISQVGAVASRPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNGWDNDKQHAVYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPYQNTL
Compound 3 - Bicyclic Binding Peptide C 18 Shigella Flexneri , Synthetic Construct ACKKGCDWLFLWHDDCAX
LPS-assembly lipoprotein LptE B 181 Shigella Flexneri , Synthetic Construct CGWHLRDTTQVPSTMKVMILDSGDPNGPLSRAVRNQLRLNGVELLDKETTRKDVPSLRLGKVSIAKDTASVFRNGQTAEYQMIMTVNATVLIPGRDIYPISAKVFRSFFDNPQMALAKDNEQDMIVKEMYDRAAEQLIRKLPSIRAADIRSDEEQTSTTTDTPATPARVSTMLGNHHHHHH
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-02-06
Deposition Author(s): Allyjaun, S. , Chirgadze, D.Y. , Dunbar, E. , Hardwick, S.W. , Hubbard, J. , Newman, H. , Van Den Berg, B.