9I93
Cryo-em structure of shigella flexneri lptde bound by a bicyclic peptide molecule (compound 2)
PDB DOI: 10.2210/pdb9i93/pdb
Classification: MEMBRANE PROTEIN Organism(s): Shigella Flexneri , Synthetic Construct
Deposited: 2025-02-06 Deposition Author(s): Allyjaun, S. , Chirgadze, D.Y. , Dunbar, E. , Hardwick, S.W. , Hubbard, J. , Newman, H. , Van Den Berg, B.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.86 Å
Cryo-em structure of shigella flexneri lptde bound by a bicyclic peptide molecule (compound 2)
Allyjaun, S. , Chirgadze, D.Y. , Dunbar, E. , Hardwick, S.W. , Hubbard, J. , Newman, H. , Van Den Berg, B.
Primary Citation of Related Structures: 9I93
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| LPS-assembly protein LptD | A | 760 | Shigella Flexneri , Synthetic Construct | ADLASQCMLGVPSYDRPLVQGDTNDLPVTINADHAKGDYPDDAVFTGSVDIMQGNSRLQADEVQLHQKEAPGQPEPVRTVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGENRYTILDNGSFTSCLPGSDTWSVVGSEIIHDREEQVAEIWNARFKVGPVPIFYSPYLQLPVGDKRRSGFLIPNAKYTTTNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEFRYLSQAGAGLMELDYLPSDKVYEDEHPNDDSSRRWLFYWNHSGVMDQVWRFNVDYTKVSDPSYFNDFDNKYGSSTDGYATQKFSVGYAVQNFNATVSTKQFQVFSEQNTSSYSAEPQLDVNYYQNDVGPFDTRIYGQAVHFVNTRDDMPEATRVHLEPTINLPLSNNWGSINTEAKFLATHYQQTNLDWYNSRNTTKLDESVNRVMPQFKVDGKMVFERDMEMLAPGYTQTLEPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGLFRDRTYGGLDRIASANQVTTGVTSRIYDDAAVERFNISVGQIYYFTESRTGDDNITWENDDKTGSLVWAGDTYWRISERWGLRGGIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYHYASPEYIQATLPKYYSTAEQYKNGISQVGAVASRPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNGWDNDKQHAVYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPYQNTL |
| LPS-assembly lipoprotein LptE | B | 181 | Shigella Flexneri , Synthetic Construct | CGWHLRDTTQVPSTMKVMILDSGDPNGPLSRAVRNQLRLNGVELLDKETTRKDVPSLRLGKVSIAKDTASVFRNGQTAEYQMIMTVNATVLIPGRDIYPISAKVFRSFFDNPQMALAKDNEQDMIVKEMYDRAAEQLIRKLPSIRAADIRSDEEQTSTTTDTPATPARVSTMLGNHHHHHH |
| Compound 2 - Bicyclic Peptide Binder | C | 17 | Shigella Flexneri , Synthetic Construct | ACRAKCDWFSWLDDCAX |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2025-02-06 Deposition Author(s): Allyjaun, S. , Chirgadze, D.Y. , Dunbar, E. , Hardwick, S.W. , Hubbard, J. , Newman, H. , Van Den Berg, B.