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FASTA Sequence PDB Format mmCIF Format
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9I78

Cryo-em structure of chaetomium thermophilum ribosome-bound snd3 translocon

PDB DOI: 10.2210/pdb9i78/pdb

Classification: RIBOSOME
Organism(s): Thermochaetoides Thermophila Dsm 1495

Deposited: 2025-01-31
Deposition Author(s): Mcdowell, M.A. , Yang, T.J.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.2 Å

9i78
Literature

Cryo-em structure of chaetomium thermophilum ribosome-bound snd3 translocon

Mcdowell, M.A. , Yang, T.J.

Primary Citation of Related Structures: 9I78


Proteins
Molecule Chains Sequence Length Organism Sequence
Translocon Sec61/SecY plug domain-containing protein 1 476 Thermochaetoides Thermophila Dsm 1495 MSSLRFLDLVKPFVPFLPEVQQPESKIPFNQKLMWTGLTLLIFLVMSQMPLYGIVSSDSSDPLYWLRMMMASNRGTLMELGITPIISSGMVFQLLAGTHMIDVNLDLKSDRELYQSAQKLFALILSVGTATVYVFTGLYGPPSELGAGIVFLLILQLVLAGMIVILLDELLQKGYGLGSGISLFIATNICESIMWKAFSPTSINTGRGPEYEGAVIALFHLLMTWPNKQRALQEAFYRQNLPNIMNLLATIVVFAAVIYLQGFRVEIPVKSSRQRGARGSYPVRLFYTSNMPIMLQSTLSSNIFLISQMLYSRFSDNLLVRLFGVWEAKDGSSQLSAVSGLVYYMSPPLNFKEALLDPIHTFVYIAYMLTACAIFSKTWIEVSGSSPRDVAKQLKDQGLVMAGHRDQSMYKELKRVIPTAAAFGGACIGALSVASDLMGALGSGTGTLLAVTIIYGYFEIAAKEGDLAGMKGMIMG
Putative 60S ribosomal protein LD 120 Thermochaetoides Thermophila Dsm 1495 MSSTQKKQRSAIADVVAREYTIHLHKRLHGVTFKKRAPRAIKEIKKFAQKAMGTSDVRLDPQLNKKVWEQGIKGVPFRIRVRISRRRNDEEGAKEKLYSYVQAVNVKNPKGLLTSVVEEE
60S ribosomal protein L32-like protein LE 131 Thermochaetoides Thermophila Dsm 1495 MVAAKKHVPIVKKRTKRFMRHQSDRFKCLDSAWRKPKGIDNRVRRRFKGNLAMPSIGYGSNKKTKHMMPSGHKAFLVHNVKDVELLLMHNRTYAAEIAHNVSSRKRIDIITRAKQLGVKVTNAKAKVTTEV
60S ribosomal protein l33-like protein LF 109 Thermochaetoides Thermophila Dsm 1495 MPSEAGHRLYVKGRHLSYQRGRRNTHPKTSLIKIEGVDDTAAANFYLGKRVAYVYRAQKEVRGTKIRVIWGKITRPHGNSGVVRAKFTHPLPARSFGASVRIMLYPSSI
Ribosomal protein l34-like protein LG 119 Thermochaetoides Thermophila Dsm 1495 MAPTRVTYRRRNPYNTTSNRTRVIKTPGGQLRVLHIKKRGTAPKCGDCGIKLPGIPALRPREYATISKPKKTVQRAYGGSRCGNCVRDRIIRAFLIEEQKIVKKVLKEQSQAEKKASKK
Dolichyl-diphosphooligosaccharide--protein glycotransferase LH 126 Thermochaetoides Thermophila Dsm 1495 MSSNGKVKAGQLWSKNKEELTKILGELKTELSQLRIQKISSSGAKLNKIHDLRKSIARVLTVINAKQRAQLRLFYKNKKYLPLDLRPKLTRALRRRLSKEDASRVLEKTKKRLTHFPQRKYAVKAA
60S ribosomal protein L36 LI 110 Thermochaetoides Thermophila Dsm 1495 MSEDATPKAPVERTGLIRGLNKGHKTTRRVLKERPSRRKGAQSKRTQFVRSLIREVAGLAPYERRVIELLRNGKDKRARKFSKKKLGTFGRAKRKCEELQRIIAESRRAH
Ribosomal protein L37 LJ 95 Thermochaetoides Thermophila Dsm 1495 MTKGTSSFGKRHNKTHGLCRRCGRRSLHNQKKVCASCGYPAAKTRKYNWSEKAKRRKVTGTGRMRYLSTVPRRFKNGFRTGVPKGARGPAVSTSS
Ribosomal protein eL39 LL 51 Thermochaetoides Thermophila Dsm 1495 MPSHKTFRIKQKLAKAQKQNRPIPQWIRLRTGNTIRYNAKRRHWRKTRLGL
Putative ribosomal protein LM 128 Thermochaetoides Thermophila Dsm 1495 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKFNCDKMICRKCYARLPPRATNCRKRKCGHSNQLRPKKKLK
60S ribosomal protein L41-A LN 25 Thermochaetoides Thermophila Dsm 1495 MRAKWRKKRTRRLKRKRRKVRARSK
SEC61 beta subunit 2 124 Thermochaetoides Thermophila Dsm 1495 MASPRATSPAPAGEKGSATGASTSASPGVLGGPRGSSPPPPGGARTAIRRRAAADQKERLANQRPNSTRAAGAGGSSNTMLKLYTDESPGLKVDPVVVLVLSLVFIFSVVALHVIAKITRKFSS
60S ribosomal protein L44-like protein LO 106 Thermochaetoides Thermophila Dsm 1495 MVNVPKTRKTFCKGKDCQKHTLHKVTQYKAGKASAFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLECSVCKTKKQLPLKRCKHFELGGDKKTKGAALVF
60S ribosomal protein L43-like protein LP 92 Thermochaetoides Thermophila Dsm 1495 MSKRTKKVGISGKYGTRYGASLRKLVKKQEVTQHARYTCTFCGKNSVRRTAVGIWSCKSCKKTMAGGAYTVSTPAAAAMRSTLRRLREITEA
Putative 60S ribosomal protein LQ 147 Thermochaetoides Thermophila Dsm 1495 MSNVSADLIWEVSRNYNSFLVKQRTGTFSRDALNLTNQHSRKHAGFVNDKALGIVPAEKGVKVIAKKVKAANKPASSLYTVTYKSTARKAYKAIASQAAKHGYRADLRQAAVARASAILRSQRPVKPEPPKKLRGAAARRAAAAGKQ
Ribosomal protein L19 LR 192 Thermochaetoides Thermophila Dsm 1495 MVNLRTQKRLAASVLGCGEGKVWLDPNEVSEISNANSRQSIRKLVADGLIIKKPVTMHSRSRARELNLARRIGRHRGFGKRKGTADARMPQQVLWMRRQRVLRRLLVKYRASGKIDKHLYHELYHLAKGNTFKHKRALVEHIHRAKAEKARERQIKEEMDAKRARTKAARERKQERQAAKRNALLGEEEESK
60S ribosomal protein L20 LS 174 Thermochaetoides Thermophila Dsm 1495 MGRLQEYQVIGRHLPTEANPNPALYRMRIFAPNEVVAKSRFWYFLRGLKKVKKATGEIVSVNVISEKHPLKVKNFGIWLRYDSRSGTHNMYKEYRETSRVAAVEAMYADMAARHRARFRSIHILKVVELEKTEDVKRPYIKQLVAKNLSFPLPHRVPKISTKKIFSAKRPSTFS
60S ribosomal protein l21-like protein LT 160 Thermochaetoides Thermophila Dsm 1495 MGHAAGLRSGTRYAFSRGFRKHGQIPLSTYLRTYRVGDIVDIKVNGAVQKGMPHKFYHGKTGVVYNVTKSAVGVIVYKRVKHRYIEKRINVRIEHVKPSRSREDFLRRVKENAELKKKAKAEGVPVQLKRQPAMPREAHTVSIADNKPVTLAPVAYETTI
60S ribosomal protein L22-like protein LU 127 Thermochaetoides Thermophila Dsm 1495 MAPVAKKSGAKGKGPKVTKKFIINASQPASDKIFDVSAFEKFLNERIKVDGRVGNLGDVIKISQIGDGKVEIIAHNDLSGRYLKYLTKKFLKKMQLRDWLRVVATSKGVYELKFYNIVNDEAEEEED
60S ribosomal protein l23-like protein LV 139 Thermochaetoides Thermophila Dsm 1495 MAKQKRGAPGGKLKMTLGLPVGAIMNCADNSGARNLYIIAVKGAGARLNRLPAGGVGDMVMATVKKGKPELRKKVHPAVIVRQAKPWKRFDGVFLYFEDNAGVIVNPKGEMKGSAITGPVGKEAAELWPRIASNAGVVM
60S ribosomal protein L25-like protein LX 156 Thermochaetoides Thermophila Dsm 1495 MAPKDVKKGGASKAAKGAQAKKAAQAALKGVHSHKKTKVRKSTTFHRPKTLVLSRAPKYPRKSIPHEPRLDEHKIIIHPLNTEGALKKIEEQNTLVFIVDVKANKAQIKQALKKLYDIDTVKINTLIRPDGTKKAFARLTPDVDALDIAATKLGLV
60S ribosomal protein L26-like protein LY 138 Thermochaetoides Thermophila Dsm 1495 MKVRPTVSSSRRKARKAHFSAPSSVRRVIMSAPLSKELREKYNVRSIPIRKGDEVQIVRGAHKDKEGKVTSVYRLKYVIHVERVTREKATGQTVPIGIHPSNVVITKLHLDKDRENILARIKAGREQVAKAKGKKTAA
SEC61 gamma subunit 3 70 Thermochaetoides Thermophila Dsm 1495 MADQIQELLDVPREFLKDGIQFINRAQKPDRREFIKISQAVGVGFLIMGAVGYFVKLIHVPLNNILVGGA
60S ribosomal protein L27 LZ 135 Thermochaetoides Thermophila Dsm 1495 MKFLKTSRVCLVTRGRYAGKKVVIIQPVDQGTKSHPYGHALVAGIERYPSKITRRMSKARIEKRSKIKPFIKVINYNHLMPTRYTLELEGLKAVINADTFKEPSQREEAKKTVKKVLEDRYNSGKNRWFFTPLRF
60S ribosomal protein L2-like protein LA 254 Thermochaetoides Thermophila Dsm 1495 MGRVIRNQRKGRGSVFTAHTRLRKAPAKFRPLDYAERHGYIRGIVKEIIHDPGRGAPLARVVFRSPYKYKQITETFIANEGMYTGQFIYAGKNAALTVGNILPLSSVPEGTVVSNVEEKPGDRGALGRTSGNYVTVVGHNPDEGKTRIKLPSGAKKVVPSSSRGMIGIVAGGGRTDKPLLKASRAKHKFAVKRNRWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRYAAQGQKAGLIAARRTGLLRGTQKTKE
60S ribosomal protein L3-like protein LB 392 Thermochaetoides Thermophila Dsm 1495 MSHRKYEAPRHGSLAFLPRKRAARHRGRVKSFPKDDPKKPVHLTAAMGYKAGMTTIVRDLDRPGAKAHKKEVVEAVTIIDCPPMVVVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYAKKYAENNGASITRELERIKKYCTVVRVLAHTQIRKTPLKQKKAHLMEIQINGGSVADKVEFGRSLFEKPVTIDTIFEKDEMIDVIAVTKGHGFVGVTARWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKIYRIGKGDDEANASTETDLTKKKITPMGGFVRYGEVNNDYVMIKGSVPGVKKRIMTLRKSLFTHTSRKALEKVELKWIDTSSEFGHGAFQTAAEKKQFMGTLKKDLQTSA
60S ribosomal protein L4-like protein LC 365 Thermochaetoides Thermophila Dsm 1495 MASRPTVTVFGADGKPTGATEVLPKVFSAPIRPDIVKHVHTGMAKNKRQPYAVSEKAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQGAFGNMCRSGRMFAPTKIWRKWHVKINQGQKRFATASALAASAVAPLLMARGHQVSTVPEVPLVVDSAAVAGDAVAKTAAAYKLLKAIGAGPDVEKVKKSKKLRAGKGKMRGRRHRQRRGPLIVYSPEHDGKELVKGFRNIPGVETCPVDALNLLQLAPGGHLGRFIVWTSAAIKQLDAVYESKKGFFLPANIVSQADLSRLINSTEIQSVLRAPKGEARTKRACVQKKNPLRNKQIMLRLNPYASTFAKEKLGEVKAEEGKPPKVPASFKELLHEA
CCDC47 4 455 Thermochaetoides Thermophila Dsm 1495 MANVLNNLFGGGKPSVSPDPLVAGDDFADFSQAAEPSPVTVQPLATTPSAVPLQPARPYTDYKDDDDKKWYRLHERYTWSDFKSEGIILCIISVFIILHVIGASLNRRKAKKWIRAHAAPLAAEFAVVGYSGIPKNVSDKKGEELVKALQDSNIAQGDNLIKERSLFEFATYATGRANVAFLEVKIALTKRFNPLTAFFESVLGFFFESGPEVGDRVEATLYPFDGKEADVVPDFPGAAELRSKDPKSTYDNFVWAIVHKECMKKARNDRYDLSLTYTKDHAKLPNWLAVMSESAEITDALLTPELIKAAEAAGDLFEYLVVTDQPEDKPKTLNETRPRKRVILKYRVPSNDDYTSLLPIFEYFLRMPDHLVQVAHFRPEVLRKVKVVRDEEIRKIQKAEEESKAEERAQEREKAKKAKRDQELSQLDAKAQKKYLEREREKELKRSMKKATIRA
60S ribosomal protein L38-like protein LK 81 Thermochaetoides Thermophila Dsm 1495 MPQEVSDIKKFIEICRRKDASSARIKKNPKTQQIKFKVRCQRFLYTLVLKDSDKAEKLKQSLPPNLQIKDVPKRNKRKSSA
Putative inorganic phosphate transporter protein 6 224 Thermochaetoides Thermophila Dsm 1495 MALSPQITNLIIIFGMMQVSKKIPFDDPNVLNMCRAAYLASNLIILCISLYIKSVVDKKKDMTTLKYIEPAPPGSSEEGKLVTTTVHAYDVEQVKILIKSQLFGIGMMAFMHLYLKYTNPLLIQSIIPLKGALESNMAKIHLWGMPATGDLKRPFKQPGGLLGGLFGQSVQADKKAVEAAERAGRGGVKEEGSGSAWSHPQFEKGGGSGGGSGGSAWSHPQFEK
Translocon-associated protein subunit alpha 7 278 Thermochaetoides Thermophila Dsm 1495 MVNFKWSALALLALRVAAVFAQEESADAEPGVLKEVSPDELKVSIDTTFPDADIFGVKLVNGRPTKAIIEITNHEEVPVDVAFIGGILKTTKPLPEDAPHYASIVRNLTAVRYGVQVPAGEKHQLPYQFVLDMMPQDVNLVLSAVITNAAAGKIYEVEAHSGPASIVDPPTSIFDPQIIFLYLFLTAFFSGIAYWVYKTWLEQFFPQAKPSRAAGPAKGKKARRAGGATSDAEPVSGSESAGGNTSGAGEKEYDESWIPAHHINRPVARKVKGGSKSK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
26S rRNA l1 3337 NA AGGUUGACCUCGGAUCAGGUAGGAGGACCCGCUGAACUUAAGCAUAUCAAUAAGCGGAGGAAAAGAAACCAACAGGGAUUGCCCUAGUAACGGCGAGUGAAGCGGCAACAGCUCAAAUUUGAAAGCUGGCUUCGGCCCGCGUUGUAAUUUGGAGAGGAUGCUUUGGGCGAGGCUCCUUCUGAGUUCCCUGGAACGGGACGCCACAGAGGGUGAGAGCCCCGUAUAGUUGGAAGCCAAGCCUGUGUAAAGCUCCUUCGACGAGUCGAGUAGUUUGGGAAUGCUGCUCAAAAUGGGAGGUAAAUUUCUUCUAAAGCUAAAUACCGGCCAGAGACCGAUAGCGCACAAGUAGAGUGAUCGAAAGAUGAAAAGCACUUUGAAAAGAGGGUUAAAUAGCACGUGAAAUUGUUGAAAGGGAAGCGCUUGUGACCAGACUUGCGCCCGGCGGAUCAUCCGGUGUUCUCACCGGUGCACUCCGCCGGGCUCAGGCCAGCAUCGGUUCUGGCGGGGGGAUAAAGGCCCAGGGAAUGUGGCUCCUCCGGGAGUGUUAUAGCCCUGGGUGUAAUACCCUCGCCGGGACCGAGGACCGCGCUCUGCAAGGAUGCUGGCGUAAUGGUCACCAGCGACCCGUCUUGAAACACGGACCAAGGAGUCAAGGUUUUGCGCGAGUGUUUGGGUGUAAAACCCGCACGCGUAAUGAAAGUGAACGUAGGUGAGAGCUUCGGCGCAUCAUCGACCGAUCCUGAUGUAUUCGGAUGGAUUUGAGUAGGAGCGUUAAGCCUUGGACCCGAAAGAUGGUGAACUAUGCUUGGAUAGGGUGAAGCCAGAGGAAACUCUGGUGGAGGCUCGCAGCGGUUCUGACGUGCAAAUCGAUCGUCAAAUCUGAGCAUGGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUACCGCCGAAGUUUCCCUCAGGAUAGCAGUGUCGACCUUCAGUUUUAUGAGGUAAAGCGAAUGAUUAGGGACUCGGGGGCGAUUUUUAGCCUUCAUCCAUUCUCAAACUUUAAAUAUGUAAGAAGCCCUUGUUACUUAACUGAACGUGGGCAUUCGAAUGUAUCGACACUAGUGGGCCAUUUUUGGUAAGCAGAACUGGCGAUGCGGGAUGAACCGAACGCGGGGUUAAGGUGCCGGAGUGGACGCUCAUCAGACACCACAAAAGGCGUUAGUACAUCUUGACAGCAGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGACUGUGUAACAACUCACCUGCCGAAUGUACUAGCCCUGAAAAUGGAUGGCGCUCAAGCGUCCCACCCAUACCCCGCCCUCAGGGUAGAAACGAUGCCCUGAGGAGUAGGCGGCCGUGGAGGUCAGUGACGAAGCCUAGGGCGUGAGCCCGGGUCGAACGGCCUCUAGUGCAGAUCUUGGUGGUAGUAGCAAAUACUUCAAUGAGAACUUGAAGGACCGAAGUGGGGAAAGGUUCCAUGUGAACAGCGGUUGGACAUGGGUUAGUCGAUCCUAAGCCAUAGGGAAGUUCCGUUUCAAAGGGGCACUCGUGCCCCGUGUGGCGAAAGGGAAGCCGGUUAAUAUUCCGGCACCUGGAUGUGGGUUUUGCGCGGCAACGCAACUGAACGCGGAGACGACGGCGGGGGCCCCGGGCAGAGUUCUCUUUUCUUCUUAACGGUCUAUCACCCUGGAAACAGUUUGUCUGGAGAUAGGGUUUAAUGGCCGGAAGAGCCCGACACUUCUGUCGGGUCCGGUGCGCUCUCGACGUCCCUUGAAAAUCCGCGGGAGGGAAUAAUUCUCACGCCAGGUCGUACUCAUAACCGCAGCAGGUCCCCAAGGUGAACAGCCUCUGGUUGAUAGAACAAUGUAGAUAAGGGAAGUCGGCAAAAUAGAUCCGUAACUUCGGGAAAAGGAUUGGCUCUAAGGGUUGGGCACGUUGGGCUUUGGGCGGACGCCCUGGGAGCAGAGGGCCUCUAGCCGGGCAACCGGCCGGCGGCCCUCAGCACCCGGGGUUGAAGCCCUUAGCAGGCUUCGGCCGUCCGGCGUGCGGUUAACAACCAACUUAGAACUGGUACGGACAGGGGGAAUCUGACUGUCUAAUUAAAACAUAGCAUUGCGAUGGCCAGAAAGUGGUGUUGACGCAAUGUGAUUUCUGCCCAGUGCUCUGAAUGUCAAAGUGAAGAAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAAAUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAUUAACGAGAUUCCCACUGUCCCUAUCUACUAUCUAGCGAAACCACAGCCAAGGGAACGGGCUUGGCAAAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUUGACUCUAGUUUGACAUUGUGAAAAGACAUAGGAGGUGUAGAAUAGGUGGGAGCUUCGGCGCCAGUGAAAUACCACUACUCCUAUUGUUUUUUUACUUAUUCAAUGAAGCGGGGCUGGACUUGCGUCCAACUUCUGGAGUUAAGGUCCUUCGCGGGCCGACCCGGGUUGAAGACAUUGUCAGGUGGGGAGUUUGGCUGGGGCGGCACAUCUGUUAAACCAUAACGCAGGUGUCCUAAGGGGGGCUCAUGGAGAACAGAAAUCUCCAGUAGAACAAAAGGGUAAAAGUCCCCUUGAUUUUGAUUUUCAGUGUGAAUACAAACCAUGAAAGUGUGGCCUAUCGAUCCUUUAGUCCCUCGAAAUUUGAGGCUAGAGGUGCCAGAAAAGUUACCACAGGGAUAACUGGCUUGUGGCGGCCAAGCGUUCAUAGCGACGUCGCUUUUUGAUCCUUCGAUGUCGGCUCUUCCUAUCAUACCGAAGCAGAAUUCGGUAAGCGUUGGAUUGUUCACCCACUAAUAGGGAACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUGAUGAACUCGUCGCAAUGGUAAUUCAGCUUAGUACGAGAGGAACCGCUGAUUCAGAUAAUUGGUUUUUGCGGUUGUCCGACCGGGCAGUGCCGCGAAGCUACCAUCUGCUGGAUAAUGGCUGAACGCCUCUAAGUCAGAAUCCAUGCCAGAACGCGACGAUACUACCCGCACGUUGUAGACGUAUAAGAAUAGGCUCCGGCCUCGUAUCCUAGCAGGCGAUUCCUCCGCCGGCCUCGAAGUGGCCGUCGGUAAUUCGCGUAUUGCAAUUUAGACACGCGCGGGAUCAAAUCCUUUGCAGACGACUUAGAUGUGCGAAAGGGUCCUGUAAGCAGUAGAGUAGCCUUGUUGUUACGAUCUGCUGAGGGUAAGCCCUCCUUCGCCUAGAUUU
5.8S rRNA l2 156 NA AAACUUUCAACAACGGAUCUCUUGGUUCUGGCAUCGAUGAAGAACGCAGCGAAAUGCGAUAAGUAAUGUGAAUUGCAGAAUUCCGUGAAUCAUCGAAUCUUUGAACGCACAUUGCGCCCGCCGGUAUUCCGGCGGGCAUGCCUGUUCGAGCGUCAU
5S rRNA l3 120 NA ACAUACGACCAUACCUAGUGGAAAACUCGGGAUCCCGUCCGCUCUCCCAUAGAUAAGCCACUAAGGGCGGGGUUAGUACUCAGGUCGGUGACGACUGGGGAAUCCCCCGUGUUGUAUGUU
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-01-31
Deposition Author(s): Mcdowell, M.A. , Yang, T.J.