Porphyromonas gingivalis 70s ribosome (w83 strain)
PDB DOI: 10.2210/pdb9i5x/pdb
Classification: RIBOSOME Organism(s): Porphyromonas Gingivalis
Deposited: 2025-01-28 Deposition Author(s): Bashan, A. , Hiregange, D.G. , Yonath, A.
Porphyromonas gingivalis 70s ribosome (w83 strain)
Bashan, A. , Hiregange, D.G. , Yonath, A.
Primary Citation of Related Structures: 9I5X
Proteins | ||||
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Molecule | Chains | Sequence Length | Organism | Sequence |
Large ribosomal subunit protein uL16 | P | 144 | Porphyromonas Gingivalis | MLQPKKTKFRRQQKGRMKGFAQRGNQLSFGSFGIKSLQSKWITGRQIEAARIAVTRYMQRQGQVWVRIFPDKPITKKGEGVRMGKGKGAPEGFVAPITPGRIIFEVEGVPYEIAKEALRLAAQKLPVTTKFVVRHDYDIQNQNA |
Small ribosomal subunit protein bS6 | B | 117 | Porphyromonas Gingivalis | MNNYETVFILTPVLSDAQMKEAVDKFTGLLKQEGAVIVNEENWGLRKLAYPIQKKSTGFYQLVEFQANPDVIAKLETNFRRDERVIRFLTFRQDKFAAEYAAKRRSLKAKTEEVKEA |
Small ribosomal subunit protein bS20 | D | 84 | Porphyromonas Gingivalis | MANHISSEKRIRQTNARRLHNRYYARTARNAVKAFRALTDRTEAEKKYPVLASMLDRLAGKNIIHKNKAANLKSKLARRINTLA |
Small ribosomal subunit protein uS17 | E | 84 | Porphyromonas Gingivalis | MERNLRKERVGVVSSNKMDKTITVAVKWKEKHPIYGKFVNKTKKYHAHDEKNECGIGDTVRIMETRPLSRTKRWRLTEIIERAK |
Small ribosomal subunit protein uS15 | F | 89 | Porphyromonas Gingivalis | MYLDSAKKAELFEKYGKSVKDTGSPESQIALFTFRIAHLTEHLRQNKKDFATERSLKMLVGKRRRMLDYLIKVDIERYRAIIKELGIRR |
Small ribosomal subunit protein uS3 | K | 246 | Porphyromonas Gingivalis | MGQKINPVSNRLGIIRGWDSNWYGGRKYGETLLEDSRIRQYLNARLAKASVSRIVIERALKLVTITICTARPGMIIGKAGQEVDKLKEELKRITKKDVQINIYEIRKPELDAAIVAENIARQLEGKIAYRRAVKMAIASAMRMGAEGIKIQVSGRLNGAEMARSEMFKEGRTPLHTLRADIDYALAEALTKVGLLGIKVWICKGEVYEKRDLAPNFAVAKNQSRRPNAQGGNNRGGDRNRRRKGNR |
Small ribosomal subunit protein uS4 | L | 201 | Porphyromonas Gingivalis | MARYTGPKSKIARKFGDPIFGADKVLSKKNYPPGQHGNNRRRKTSEYGLQLREKQKAKYTYGVLEKQFRHLFHRAQRAKGVTGELLIQFLEARLDNVVFRLGIAPTRSAARQLVSHRHITVDGSVVNIPSYSVKPGQVIGVRERSKSLEVIADALTGFNHSKYPWMEWDQSSLSGKLLHMPDRTDIPENIKEQLIVELYSK |
Small ribosomal subunit protein uS7 | M | 158 | Porphyromonas Gingivalis | MRKAKPKKRQILPDPVYGDVRVTKFVNHLMYDGKKNTAFSIFYGALDIVKTKHSNEEKSALEIWKAALDNITPQVEVKSRRIGGATFQVPTEIRPERKESISMKNLILYARKRGGKTMADKLAAEIVDAFNNQGAAFKRKEDMHRMAEANRAFAHFRF |
Small ribosomal subunit protein uS5 | N | 172 | Porphyromonas Gingivalis | MAIVYNRVKSTNDLELKDRLVAINRVTKVTKGGRTFTFAAIVVVGNEDGVIGWGLGKAGEVPAAIAKGVEAAKKNLIRVPVHNGTIPHEQAASYGGASVFLKPATTGTGVKAGGAMRAVLDSVGVTDVLAKSKGSSNPHNLVKATIQALAEMRSPLMVAQNRGISVEKVFKG |
Small ribosomal subunit protein uS8 | O | 131 | Porphyromonas Gingivalis | MTDPIADYLTRLRNAIMAGHRVVSVPASNIKKEITKILFDKGYILNYKFEENDSQGIIKVALKYDLAHKVNAIKKLKRVSRPGLRKYVGYRDMPRVLNGLGIAIVSTPRGVMTDKEARELKVGGEVLCYVY |
Large ribosomal subunit protein bL28 | 0 | 79 | Porphyromonas Gingivalis | MSKICQITGKKAMVGNNVSHSKRRTKRVFDVNLFRKKFYWVEQDCWVVLRISAAGLRLINKIGLDAAIKRAAEKGFLNA |
Large ribosomal subunit protein bL17 | Q | 160 | Porphyromonas Gingivalis | MRHNKKFNHLGRKAAHRKAMLSNMAASLILHKRIFTTVAKAKALRIYVEPLLTKTKEDTTHSRRIAFSYLQNKYALKELFGDVAAKIADRPGGYTRILKTGYRLGDNAAMCFIELVDYNENMLGEAAKKATKTRRSRKRKSADVVVEAAPAEETPKAAEE |
Large ribosomal subunit protein uL18 | R | 114 | Porphyromonas Gingivalis | MVTKEQRRQKIKARVRGKISGTQEKPRLTVFRSNKQIYAQLIDDIAGRTLASASSLKLEMTGSKKEIAAKVGDEIAKAATEAGISTVVFDRNGYLFHGRIKELADAARKGGLKF |
Large ribosomal subunit protein bL19 | S | 121 | Porphyromonas Gingivalis | MDFIKIVNEEFKSGKEHPKFNSGDTITVEYRIKEGNKERIQKYRGVVIRISGHGDKKRFTVRKISDGIGVERIFPIESPFIENITVEKYGKVRRAKLYYLRGLTGKKARIKERRVALSSKD |
Large ribosomal subunit protein bL20 | T | 115 | Porphyromonas Gingivalis | MPRSVNHVASRAKRKRILKLTRGYFGARKNVWTVAKNTWEKGLTYAYRDRKSKKRNFRALWIQRINAAARLEGMSYSRLMGALHANGIEINRKVLADLAMNHPEAFRAIVAKVKN |
Large ribosomal subunit protein bL21 | U | 105 | Porphyromonas Gingivalis | MYVIVDIQGQQMKVEQGRRLFVHHIKDVESGASVEFDKVLLVDNNGAITVGSPLVEGAKVVCEVLTPLVKGDKVLIFHKKRRKGYRKLNGHRQQFTEILVKEVVA |
Large ribosomal subunit protein uL22 | V | 134 | Porphyromonas Gingivalis | MGARKHNSAEARKEALKQMYFAKLRNVPTSPRKMRLVADMIRGMEVNRALGVLKFSNKEASARVEKLLRSAVANWEEKNERKAEEGELFVSRICVDGASTLKRLRPAPQGRGYRIRKRSNHVTIYVDTLNNDNN |
Large ribosomal subunit protein uL23 | W | 97 | Porphyromonas Gingivalis | MGIIIKPIISEKMTAVTEKMSERYGFRVSPNANKIEIKKAVEAMYNVKVEDVNTMRYDGKRKNRYTKSGLIRGKEASFKKAIVTLKKGETIDFFSNI |
Large ribosomal subunit protein uL24 | X | 106 | Porphyromonas Gingivalis | MSKLHIKKGDTVMVISGEDKGHSGRVLEVLVKEQRAIVEGLNMIKKHAKPSAKNPQGGIISKEAPIHISNLNVVDPKTGKATRIGRRLNENGKLVRYAKKSGEEIK |
Large ribosomal subunit protein bL27 | Z | 85 | Porphyromonas Gingivalis | MAHKKGVGSSKNGRESESKRLGVKVYGGEMAKAGNILVRQRGTVHHPGENVGIGKDHTLYALKSGVVVFTRKKNDRSYVSIKTES |
Large ribosomal subunit protein uL29 | 1 | 64 | Porphyromonas Gingivalis | MKIAEIKELATKELQERLDAEVAAYDQMRINHAVSPLDSPAKLKHQRRMIAQMKTVLRQRELNK |
Small ribosomal subunit protein bS16 | C | 192 | Porphyromonas Gingivalis | MATKIRLQRHGRKGYAFYKIVVADSRAPRDGKFIERIGSYNPNTNPATIDLNFERALYWIGVGAQPTDTARNILSREGVLMMKHLLGGVKKGAFDQAAAENKFEAWLKGKKDALNNMKAKVKEAAVADDKVKLEAEKAVNKARAEAVAEKKAAEAKAKAEAEAAAAAEEAAETEETPVEAAAEEAPAAESAE |
Small ribosomal subunit protein uS14 | G | 89 | Porphyromonas Gingivalis | MAKESMKAREVKRAKLVAKYAAKRAALKAEGNYEALQLLPKNASPVRLHNRCSMTGRPKGYMRQFGISRIQFREMASAGLIPGVKKASW |
Large ribosomal subunit protein bL9 | H | 179 | Porphyromonas Gingivalis | MQVILKEDVVNLGYKDDIVTVKDGYGRNFLIPQGKAVIASESAKKVLAENLRQRAHKIAQIKKEAEEKAASMQGISLTIKAKTSSTGTIFGSVTNIQIAEELAKKGVEVDRKIIVLKPAVKEVGNYTAVVRLHKEVTVEIPFEVVSENETIIEAKPEGAPVPVAEEPAAEAEQAEVAAE |
Small ribosomal subunit protein bS18 | I | 90 | Porphyromonas Gingivalis | MAANNQGEIRYLTPLSVDTKKKKYCRFKKSGIRYIDYKDPEFLKKFLNEQGKILPRRITGTSLKFQRRVAQAVKRARHLALLPYVTDMMK |
Small ribosomal subunit protein uS9 | J | 128 | Porphyromonas Gingivalis | MDYINAIGRRKAAVARVYLSEGSGKIVINKREIEQYFPSSILQYIVKQPLLKLDVAAKYDIKINLRGGGFKGQSEAARLAIARALVKINPDDKPALRSEGFITRDPRVVERKKPGRPKARKRFQFSKR |
Large ribosomal subunit protein uL30 | 2 | 58 | Porphyromonas Gingivalis | MAKIKIQQVRSRIRCPKDQKRTLDALGLRKLNQIVEHEATPSILGMVNKVRHLVLIVE |
Large ribosomal subunit protein bL25 | Y | 192 | Porphyromonas Gingivalis | MKTFQLTGTPRAEFGKKAAKAIRKEDQIPAVLYGGKGEGVNFIVSQDAVRNLIYSPEIFLVELTVEGSGSYKAILKEIQFHPVTDRIIHIDFLQVTDEKPVVMEVPVVLTGHAEGVKAGGKLSLEMRKLKVKALYSEIPEKLDIDVSDLQLGKTIQVGELHFEGLTLMNAKNAVVCAVKLTRAARGAAVKKQ |
AURKAIP1/COX24 domain-containing protein | 10 | 30 | Porphyromonas Gingivalis | MPNGKKRKRHKMATHKRKKRLKKNRHKKKK |
Large ribosomal subunit protein bL32 | 4 | 61 | Porphyromonas Gingivalis | MAHPKRRQSKTRTAKRRTHDKAVMPTLAKCPNCGAWHIYHTVCGDCGYYRGKLAIEKEVAV |
Large ribosomal subunit protein bL33 | 5 | 62 | Porphyromonas Gingivalis | MAKKVKGNRVQVILECTEHKESGMPGISRYITTKNRKNTTQRLELKKYNPILRRMTLHKEIK |
Large ribosomal subunit protein bL34 | 6 | 50 | Porphyromonas Gingivalis | MKRTYQPSNRKRLNKHGFRSRMATANGRRVLAARRAKGRAKLTVSDEFVG |
Large ribosomal subunit protein bL35 | 7 | 65 | Porphyromonas Gingivalis | MPKLKTNSGAKKRFALTGTGKIKRKHAFKSHILTKKTKKQKRNLTYFSTVHKVDENAVKQLLCLR |
Large ribosomal subunit protein bL36 | 8 | 38 | Porphyromonas Gingivalis | MKVRASVKKRTPECKIVRRKGRLYVINKKNPKYKQRQG |
Nucleic Acids / Hybrid | ||||
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Molecule | Chains | Sequence Length | Organism | Sequence |
16S rRNA | a | 1534 | NA | ACAGUGGAGAGUUUGAUCCUGGCUCAGGAUGAACGCUAGCGAUAGGCUUAACACAUGCAAGUCGAGGGGCAGCAUGAUCUUAGCUUGCUAAGGUUGAUGGCGACCGGCGCACGGGUGCGUAACGCGUAUGCAACUUGCCUUACAGAGGGGGAUAACCCGUUGAAAGACGGACUAAAACCGCAUACACUUGUAUUAUUGCAUGAUAUUACAAGGAAAUAUUUAUAGCUGUAAGAUAGGCAUGCGUCCCAUUAGCUUGUUGGUGAGGUAACGGCUCAXCAAGGCGACGAUGGGUAGGGGAACUGAGAGGUUUAUCCCCCACACUGGUACUGAGACACGGACCAGACUCCUACGGGAGGCAGCAGUGAGGAAUAUUGGUCAAUGGGCGAGAGCCUGAACCAGCCAAGUCGCGUGAAGGAAGACAGUCCUAAGGAUUGUAAACUUCUUUUAUACGGGAAUAACGGGCGAUACGAGUAUUGCAUUGAAUGUACCGUAAGAAACAGCAUCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGAUGCGAGCGUUAUCCGGAUUUAUUGGGUUUAAAGGGUGCGUAGGUUGUUCGGUAAGUCAGCGGUGAAACCUGAGCGCUCAACGUUCAGCCUGCCGUUGAAACUGCCGGGCUUGAGUUCAGUGGCGGCAGGCGGAAUUCGUGGUGUAGCGGUGAAAUGCAUAGAUAUCACGAGGAACUCCGAUUGCGAAGGCAGCUUGCCAUACUGCGACUGACACUGAAGCACGAAGGCGUGGGUAUCAAACAGGAUUAGAUACCCUGGUAGUCCACGCAGUAAACGAUGAUUACUAGGAGUUUGCGAUAUACCGUCAAGCUUCCACAGCGAAAGCGUUAAGUAAUCCACCUGGGGAGUACGCCGGCAACGGUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGAGGAACAUGUGGUUUAAUUCGAUGAUACGCGAGGAACCUCAUUUGGGAUUGAAAUGUGGAUGACGGAUGGUGAAAACCGUCUUCCCUUCGGGGCUUCUAUGUAAGGUGCUGCAUGGUUGUCGCCAGCUCGUGCCGUGAGGUUCGGCUUAAGUGCCAUAAACGAGCGAACCCCACAUCGGUAGUUACUACAGUUUUCCGCUGAGGACUCUACCGAGAUGCCGUCGUAAGGCGUGAGGAAGGUGGUGGAUGACGUCAAAUCAGCACGGCCCUUACAUCCGGGGCGACACACGUGUUACAAUGGGAGGGACAAAGGGCAGCUACCGGGCGACCGGAUGCGAAUCUCUAAACCCUUCCCCAGUUCGGAUCGGAGUCUGCAACUCGACUCCGUGAAGCUGGAUUCGCUAGUAAUCGCGCAUCAGCCAUGGCGCGGUGAAUACGUCCCGGGGCCUUGUACACACCGCCCGUCAAGCCAUGGGAGUCGGGGGUACCUGAAGGGCGAACCGCAAGGGGGCGCACUAGGGUAAACCCGGUGACUGGGGCUAAGUCGUAACAAGGUAGCCGUACCGGAAGGUGCGGCUGGAACCCUCCUUUCU |
Method: ELECTRON MICROSCOPY
Deposited Date: 2025-01-28 Deposition Author(s): Bashan, A. , Hiregange, D.G. , Yonath, A.