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FASTA Sequence PDB Format mmCIF Format
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9I5X

Porphyromonas gingivalis 70s ribosome (w83 strain)

PDB DOI: 10.2210/pdb9i5x/pdb

Classification: RIBOSOME
Organism(s): Porphyromonas Gingivalis

Deposited: 2025-01-28
Deposition Author(s): Bashan, A. , Hiregange, D.G. , Yonath, A.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.0 Å

9i5x
Literature

Porphyromonas gingivalis 70s ribosome (w83 strain)

Bashan, A. , Hiregange, D.G. , Yonath, A.

Primary Citation of Related Structures: 9I5X


Proteins
Molecule Chains Sequence Length Organism Sequence
Large ribosomal subunit protein uL16 P 144 Porphyromonas Gingivalis MLQPKKTKFRRQQKGRMKGFAQRGNQLSFGSFGIKSLQSKWITGRQIEAARIAVTRYMQRQGQVWVRIFPDKPITKKGEGVRMGKGKGAPEGFVAPITPGRIIFEVEGVPYEIAKEALRLAAQKLPVTTKFVVRHDYDIQNQNA
Small ribosomal subunit protein bS6 B 117 Porphyromonas Gingivalis MNNYETVFILTPVLSDAQMKEAVDKFTGLLKQEGAVIVNEENWGLRKLAYPIQKKSTGFYQLVEFQANPDVIAKLETNFRRDERVIRFLTFRQDKFAAEYAAKRRSLKAKTEEVKEA
Small ribosomal subunit protein bS20 D 84 Porphyromonas Gingivalis MANHISSEKRIRQTNARRLHNRYYARTARNAVKAFRALTDRTEAEKKYPVLASMLDRLAGKNIIHKNKAANLKSKLARRINTLA
Small ribosomal subunit protein uS17 E 84 Porphyromonas Gingivalis MERNLRKERVGVVSSNKMDKTITVAVKWKEKHPIYGKFVNKTKKYHAHDEKNECGIGDTVRIMETRPLSRTKRWRLTEIIERAK
Small ribosomal subunit protein uS15 F 89 Porphyromonas Gingivalis MYLDSAKKAELFEKYGKSVKDTGSPESQIALFTFRIAHLTEHLRQNKKDFATERSLKMLVGKRRRMLDYLIKVDIERYRAIIKELGIRR
Small ribosomal subunit protein uS3 K 246 Porphyromonas Gingivalis MGQKINPVSNRLGIIRGWDSNWYGGRKYGETLLEDSRIRQYLNARLAKASVSRIVIERALKLVTITICTARPGMIIGKAGQEVDKLKEELKRITKKDVQINIYEIRKPELDAAIVAENIARQLEGKIAYRRAVKMAIASAMRMGAEGIKIQVSGRLNGAEMARSEMFKEGRTPLHTLRADIDYALAEALTKVGLLGIKVWICKGEVYEKRDLAPNFAVAKNQSRRPNAQGGNNRGGDRNRRRKGNR
Small ribosomal subunit protein uS4 L 201 Porphyromonas Gingivalis MARYTGPKSKIARKFGDPIFGADKVLSKKNYPPGQHGNNRRRKTSEYGLQLREKQKAKYTYGVLEKQFRHLFHRAQRAKGVTGELLIQFLEARLDNVVFRLGIAPTRSAARQLVSHRHITVDGSVVNIPSYSVKPGQVIGVRERSKSLEVIADALTGFNHSKYPWMEWDQSSLSGKLLHMPDRTDIPENIKEQLIVELYSK
Small ribosomal subunit protein uS7 M 158 Porphyromonas Gingivalis MRKAKPKKRQILPDPVYGDVRVTKFVNHLMYDGKKNTAFSIFYGALDIVKTKHSNEEKSALEIWKAALDNITPQVEVKSRRIGGATFQVPTEIRPERKESISMKNLILYARKRGGKTMADKLAAEIVDAFNNQGAAFKRKEDMHRMAEANRAFAHFRF
Small ribosomal subunit protein uS5 N 172 Porphyromonas Gingivalis MAIVYNRVKSTNDLELKDRLVAINRVTKVTKGGRTFTFAAIVVVGNEDGVIGWGLGKAGEVPAAIAKGVEAAKKNLIRVPVHNGTIPHEQAASYGGASVFLKPATTGTGVKAGGAMRAVLDSVGVTDVLAKSKGSSNPHNLVKATIQALAEMRSPLMVAQNRGISVEKVFKG
Small ribosomal subunit protein uS8 O 131 Porphyromonas Gingivalis MTDPIADYLTRLRNAIMAGHRVVSVPASNIKKEITKILFDKGYILNYKFEENDSQGIIKVALKYDLAHKVNAIKKLKRVSRPGLRKYVGYRDMPRVLNGLGIAIVSTPRGVMTDKEARELKVGGEVLCYVY
Large ribosomal subunit protein bL28 0 79 Porphyromonas Gingivalis MSKICQITGKKAMVGNNVSHSKRRTKRVFDVNLFRKKFYWVEQDCWVVLRISAAGLRLINKIGLDAAIKRAAEKGFLNA
Large ribosomal subunit protein bL17 Q 160 Porphyromonas Gingivalis MRHNKKFNHLGRKAAHRKAMLSNMAASLILHKRIFTTVAKAKALRIYVEPLLTKTKEDTTHSRRIAFSYLQNKYALKELFGDVAAKIADRPGGYTRILKTGYRLGDNAAMCFIELVDYNENMLGEAAKKATKTRRSRKRKSADVVVEAAPAEETPKAAEE
Large ribosomal subunit protein uL18 R 114 Porphyromonas Gingivalis MVTKEQRRQKIKARVRGKISGTQEKPRLTVFRSNKQIYAQLIDDIAGRTLASASSLKLEMTGSKKEIAAKVGDEIAKAATEAGISTVVFDRNGYLFHGRIKELADAARKGGLKF
Large ribosomal subunit protein bL19 S 121 Porphyromonas Gingivalis MDFIKIVNEEFKSGKEHPKFNSGDTITVEYRIKEGNKERIQKYRGVVIRISGHGDKKRFTVRKISDGIGVERIFPIESPFIENITVEKYGKVRRAKLYYLRGLTGKKARIKERRVALSSKD
Large ribosomal subunit protein bL20 T 115 Porphyromonas Gingivalis MPRSVNHVASRAKRKRILKLTRGYFGARKNVWTVAKNTWEKGLTYAYRDRKSKKRNFRALWIQRINAAARLEGMSYSRLMGALHANGIEINRKVLADLAMNHPEAFRAIVAKVKN
Large ribosomal subunit protein bL21 U 105 Porphyromonas Gingivalis MYVIVDIQGQQMKVEQGRRLFVHHIKDVESGASVEFDKVLLVDNNGAITVGSPLVEGAKVVCEVLTPLVKGDKVLIFHKKRRKGYRKLNGHRQQFTEILVKEVVA
Large ribosomal subunit protein uL22 V 134 Porphyromonas Gingivalis MGARKHNSAEARKEALKQMYFAKLRNVPTSPRKMRLVADMIRGMEVNRALGVLKFSNKEASARVEKLLRSAVANWEEKNERKAEEGELFVSRICVDGASTLKRLRPAPQGRGYRIRKRSNHVTIYVDTLNNDNN
Large ribosomal subunit protein uL23 W 97 Porphyromonas Gingivalis MGIIIKPIISEKMTAVTEKMSERYGFRVSPNANKIEIKKAVEAMYNVKVEDVNTMRYDGKRKNRYTKSGLIRGKEASFKKAIVTLKKGETIDFFSNI
Large ribosomal subunit protein uL24 X 106 Porphyromonas Gingivalis MSKLHIKKGDTVMVISGEDKGHSGRVLEVLVKEQRAIVEGLNMIKKHAKPSAKNPQGGIISKEAPIHISNLNVVDPKTGKATRIGRRLNENGKLVRYAKKSGEEIK
Large ribosomal subunit protein bL27 Z 85 Porphyromonas Gingivalis MAHKKGVGSSKNGRESESKRLGVKVYGGEMAKAGNILVRQRGTVHHPGENVGIGKDHTLYALKSGVVVFTRKKNDRSYVSIKTES
Large ribosomal subunit protein uL29 1 64 Porphyromonas Gingivalis MKIAEIKELATKELQERLDAEVAAYDQMRINHAVSPLDSPAKLKHQRRMIAQMKTVLRQRELNK
Small ribosomal subunit protein bS16 C 192 Porphyromonas Gingivalis MATKIRLQRHGRKGYAFYKIVVADSRAPRDGKFIERIGSYNPNTNPATIDLNFERALYWIGVGAQPTDTARNILSREGVLMMKHLLGGVKKGAFDQAAAENKFEAWLKGKKDALNNMKAKVKEAAVADDKVKLEAEKAVNKARAEAVAEKKAAEAKAKAEAEAAAAAEEAAETEETPVEAAAEEAPAAESAE
Small ribosomal subunit protein uS14 G 89 Porphyromonas Gingivalis MAKESMKAREVKRAKLVAKYAAKRAALKAEGNYEALQLLPKNASPVRLHNRCSMTGRPKGYMRQFGISRIQFREMASAGLIPGVKKASW
Large ribosomal subunit protein bL9 H 179 Porphyromonas Gingivalis MQVILKEDVVNLGYKDDIVTVKDGYGRNFLIPQGKAVIASESAKKVLAENLRQRAHKIAQIKKEAEEKAASMQGISLTIKAKTSSTGTIFGSVTNIQIAEELAKKGVEVDRKIIVLKPAVKEVGNYTAVVRLHKEVTVEIPFEVVSENETIIEAKPEGAPVPVAEEPAAEAEQAEVAAE
Small ribosomal subunit protein bS18 I 90 Porphyromonas Gingivalis MAANNQGEIRYLTPLSVDTKKKKYCRFKKSGIRYIDYKDPEFLKKFLNEQGKILPRRITGTSLKFQRRVAQAVKRARHLALLPYVTDMMK
Small ribosomal subunit protein uS9 J 128 Porphyromonas Gingivalis MDYINAIGRRKAAVARVYLSEGSGKIVINKREIEQYFPSSILQYIVKQPLLKLDVAAKYDIKINLRGGGFKGQSEAARLAIARALVKINPDDKPALRSEGFITRDPRVVERKKPGRPKARKRFQFSKR
Large ribosomal subunit protein uL30 2 58 Porphyromonas Gingivalis MAKIKIQQVRSRIRCPKDQKRTLDALGLRKLNQIVEHEATPSILGMVNKVRHLVLIVE
Large ribosomal subunit protein bL25 Y 192 Porphyromonas Gingivalis MKTFQLTGTPRAEFGKKAAKAIRKEDQIPAVLYGGKGEGVNFIVSQDAVRNLIYSPEIFLVELTVEGSGSYKAILKEIQFHPVTDRIIHIDFLQVTDEKPVVMEVPVVLTGHAEGVKAGGKLSLEMRKLKVKALYSEIPEKLDIDVSDLQLGKTIQVGELHFEGLTLMNAKNAVVCAVKLTRAARGAAVKKQ
AURKAIP1/COX24 domain-containing protein 10 30 Porphyromonas Gingivalis MPNGKKRKRHKMATHKRKKRLKKNRHKKKK
Large ribosomal subunit protein bL32 4 61 Porphyromonas Gingivalis MAHPKRRQSKTRTAKRRTHDKAVMPTLAKCPNCGAWHIYHTVCGDCGYYRGKLAIEKEVAV
Large ribosomal subunit protein bL33 5 62 Porphyromonas Gingivalis MAKKVKGNRVQVILECTEHKESGMPGISRYITTKNRKNTTQRLELKKYNPILRRMTLHKEIK
Large ribosomal subunit protein bL34 6 50 Porphyromonas Gingivalis MKRTYQPSNRKRLNKHGFRSRMATANGRRVLAARRAKGRAKLTVSDEFVG
Large ribosomal subunit protein bL35 7 65 Porphyromonas Gingivalis MPKLKTNSGAKKRFALTGTGKIKRKHAFKSHILTKKTKKQKRNLTYFSTVHKVDENAVKQLLCLR
Large ribosomal subunit protein bL36 8 38 Porphyromonas Gingivalis MKVRASVKKRTPECKIVRRKGRLYVINKKNPKYKQRQG

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
16S rRNA a 1534 NA ACAGUGGAGAGUUUGAUCCUGGCUCAGGAUGAACGCUAGCGAUAGGCUUAACACAUGCAAGUCGAGGGGCAGCAUGAUCUUAGCUUGCUAAGGUUGAUGGCGACCGGCGCACGGGUGCGUAACGCGUAUGCAACUUGCCUUACAGAGGGGGAUAACCCGUUGAAAGACGGACUAAAACCGCAUACACUUGUAUUAUUGCAUGAUAUUACAAGGAAAUAUUUAUAGCUGUAAGAUAGGCAUGCGUCCCAUUAGCUUGUUGGUGAGGUAACGGCUCAXCAAGGCGACGAUGGGUAGGGGAACUGAGAGGUUUAUCCCCCACACUGGUACUGAGACACGGACCAGACUCCUACGGGAGGCAGCAGUGAGGAAUAUUGGUCAAUGGGCGAGAGCCUGAACCAGCCAAGUCGCGUGAAGGAAGACAGUCCUAAGGAUUGUAAACUUCUUUUAUACGGGAAUAACGGGCGAUACGAGUAUUGCAUUGAAUGUACCGUAAGAAACAGCAUCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGAUGCGAGCGUUAUCCGGAUUUAUUGGGUUUAAAGGGUGCGUAGGUUGUUCGGUAAGUCAGCGGUGAAACCUGAGCGCUCAACGUUCAGCCUGCCGUUGAAACUGCCGGGCUUGAGUUCAGUGGCGGCAGGCGGAAUUCGUGGUGUAGCGGUGAAAUGCAUAGAUAUCACGAGGAACUCCGAUUGCGAAGGCAGCUUGCCAUACUGCGACUGACACUGAAGCACGAAGGCGUGGGUAUCAAACAGGAUUAGAUACCCUGGUAGUCCACGCAGUAAACGAUGAUUACUAGGAGUUUGCGAUAUACCGUCAAGCUUCCACAGCGAAAGCGUUAAGUAAUCCACCUGGGGAGUACGCCGGCAACGGUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGAGGAACAUGUGGUUUAAUUCGAUGAUACGCGAGGAACCUCAUUUGGGAUUGAAAUGUGGAUGACGGAUGGUGAAAACCGUCUUCCCUUCGGGGCUUCUAUGUAAGGUGCUGCAUGGUUGUCGCCAGCUCGUGCCGUGAGGUUCGGCUUAAGUGCCAUAAACGAGCGAACCCCACAUCGGUAGUUACUACAGUUUUCCGCUGAGGACUCUACCGAGAUGCCGUCGUAAGGCGUGAGGAAGGUGGUGGAUGACGUCAAAUCAGCACGGCCCUUACAUCCGGGGCGACACACGUGUUACAAUGGGAGGGACAAAGGGCAGCUACCGGGCGACCGGAUGCGAAUCUCUAAACCCUUCCCCAGUUCGGAUCGGAGUCUGCAACUCGACUCCGUGAAGCUGGAUUCGCUAGUAAUCGCGCAUCAGCCAUGGCGCGGUGAAUACGUCCCGGGGCCUUGUACACACCGCCCGUCAAGCCAUGGGAGUCGGGGGUACCUGAAGGGCGAACCGCAAGGGGGCGCACUAGGGUAAACCCGGUGACUGGGGCUAAGUCGUAACAAGGUAGCCGUACCGGAAGGUGCGGCUGGAACCCUCCUUUCU
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-01-28
Deposition Author(s): Bashan, A. , Hiregange, D.G. , Yonath, A.