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9I5I

Pr1 phage heterodimeric dna ligase in complex with 21-mer nicked dna (random sequence)

PDB DOI: 10.2210/pdb9i5i/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Providencia Phage Vb_Pres_Pr1 , Synthetic Construct

Deposited: 2025-01-28
Deposition Author(s): Macneill, S.A. , Richardson, J.M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.65 Å

Literature

Pr1 phage heterodimeric dna ligase in complex with 21-mer nicked dna (random sequence)

Macneill, S.A. , Richardson, J.M.

Primary Citation of Related Structures: 9I5I


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA ligase (NAD(+)) A 339 Providencia Phage Vb_Pres_Pr1 , Synthetic Construct GNSGDPMVLAIKNYIRDCQDAYYNGDPIISDEQYDKLIAKYPDAEDQIGTIGDVPHMFRMYSLRKYYPSRGDELPEGFDIETPKLDGCAVEHLYIDGVYVSSTTRGNGKLGKDCTHNLSMLVPKNINGIIRSPVPRVIQIRGEVVVSKPEGLENVRNYASGKVNLKDSTEFAQAVEEGGLMFIAYGVNSNNHEGYTEWYDKDMELLSTFGFFTCLDKTIKIATDDGDILTDGLVRRVNSNSEYEKLGFTDKFPRGAYAIKEDEEGEVTTLREVQWQVGKSGKVTPVGIFDTVIIDDAQISKATLNNAGFIEAMELTIGCQIRVIRSGGVIPKIVEKVED
DNA ligase (NAD(+)) E 339 Providencia Phage Vb_Pres_Pr1 , Synthetic Construct GNSGDPMVLAIKNYIRDCQDAYYNGDPIISDEQYDKLIAKYPDAEDQIGTIGDVPHMFRMYSLRKYYPSRGDELPEGFDIETPKLDGCAVEHLYIDGVYVSSTTRGNGKLGKDCTHNLSMLVPKNINGIIRSPVPRVIQIRGEVVVSKPEGLENVRNYASGKVNLKDSTEFAQAVEEGGLMFIAYGVNSNNHEGYTEWYDKDMELLSTFGFFTCLDKTIKIATDDGDILTDGLVRRVNSNSEYEKLGFTDKFPRGAYAIKEDEEGEVTTLREVQWQVGKSGKVTPVGIFDTVIIDDAQISKATLNNAGFIEAMELTIGCQIRVIRSGGVIPKIVEKVED
DNA ligase subunit B B 248 Providencia Phage Vb_Pres_Pr1 , Synthetic Construct MKIQIPTHCPICGSVLERVNSQLFCRNKDNCSAQSSKSLESFCKKMKLKGFGEKTLEKLELTSVPELFYIDSSFLEEILGEKIGNKLSAELDRMRTSVEMSTLLASLSIPLVGTVAAEKAVAGATSLADTKLSGKAGESLEVWKHSDLGKEIMALPWNFTKVTQVVNETESLGIAVCVTGSVEGHTRTSITKHLESLGFTVKKSVTKDVKYLICEDESKRSSSSYLKALENGVEIGSLTKLILKYKRK
DNA ligase subunit B F 248 Providencia Phage Vb_Pres_Pr1 , Synthetic Construct MKIQIPTHCPICGSVLERVNSQLFCRNKDNCSAQSSKSLESFCKKMKLKGFGEKTLEKLELTSVPELFYIDSSFLEEILGEKIGNKLSAELDRMRTSVEMSTLLASLSIPLVGTVAAEKAVAGATSLADTKLSGKAGESLEVWKHSDLGKEIMALPWNFTKVTQVVNETESLGIAVCVTGSVEGHTRTSITKHLESLGFTVKKSVTKDVKYLICEDESKRSSSSYLKALENGVEIGSLTKLILKYKRK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA nicked strand c 21 NA CGCAGTCCAGCACACCATCGG
DNA nicked strand h 21 NA CGCAGTCCAGCACACCATCGG
DNA intact strand d 21 NA CCGATGGTGTGCTGGACTGCG
DNA intact strand g 21 NA CCGATGGTGTGCTGGACTGCG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2025-01-28
Deposition Author(s): Macneill, S.A. , Richardson, J.M.