9HIG
Cryo-em composite structure of 70s ribosome of marine cold bacterium pseudoalteromonas translucida (p. haloplanktis)tac125.
PDB DOI: 10.2210/pdb9hig/pdb
Classification: RIBOSOME Organism(s): Pseudoalteromonas Translucida Tac125
Deposited: 2024-11-26 Deposition Author(s): Emmerich, A.G. , Godsora, B.K.J. , Majumdar, S. , Sanyal, S. , Singh, V.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.36 Å
Cryo-em composite structure of 70s ribosome of marine cold bacterium pseudoalteromonas translucida (p. haloplanktis)tac125.
Emmerich, A.G. , Godsora, B.K.J. , Majumdar, S. , Sanyal, S. , Singh, V.
Primary Citation of Related Structures: 9HIG
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 23S rRNA | a | 2889 | NA | GGUUAAGUGACUAAGCGUACACGGUGGAUGCCUUGGCAGUUGGAGGCGAUGAAGGACGUAUUAACUUGCGAUAAGCCUAGUCAAGCUAGUAAAAAGCACUUGAGACUAGGAUUUCCGAAUGGGGAAACCCACCUGCUUGCAGGUAUCGUUAACUGAAUACAUAGGUUAACGAGGCGAACGCGGAGAACUGAAACAUCUAAGUACCCGUAGGAAAAGAAAUCAACCGAGAUUCCGAAAGUAGCGGCGAGCGAAAUCGGAACAGCCCUUAAGCUUAUUAUGUGUUAAUGGAAGGCUGCUGGAAAGCGCCACGAUACAGGGUGAUAGUCCCGUACAUGAAAAGACAUUUUAAGUGAAAUCGAGUAGGUCGGAGCACGUGAAACUUUGACUGAAUAUAGGUGGACCAUCAUCUAAGGCUAAAUACUCCCAACUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGCGAAAAGAACCCCUGUGAGGGGAGUGAAAUAGAACCUGAAACCGUGUACGUACAAGCAGUAGGAGCCCACUUGUUGGGUGACUGCGUACCUUUUGUAUAAUGGGUCAGCGACUUAUAUUUUGUAGCGAGGUUAACCGAUUAGGGUAGCCGUAGGGAAACCGAGUCUUAACUGGGCGAAUAGUUGCAAGGUAUAGACCCGAAACCCGGUGAUCUAGCCAUGAGCAGGUUGAAGGUUGAGUAACAUCAACUGGAGGACCGAACCCACUAACGUUGAAAAGUUAGGGGAUGACUUGUGGUUAGGAGUGAAAGGCUAAUCAAACCGGGAGAUAGCUGGUUCUCCCCGAAAUCUAUUUAGGUAGAGCCUCGGACGAAUACUUACGGGGGUAGAGCACUGUUAAGGCUAGGGGGUCAUCCCGACUUACCAACCCUUUGCAAACUCCGAAUACCGUAAAGUAAUAUCCGGGAGACACACGGCGGGUGCUAACGUCCGUCGUGAAGAGGGAAACAACCCAGACCGCCAGCUAAGGUCCCAAAGUCAUAGUUAAGUGGGAAACGAUGUGGAAAGGCCCAGACAGCCAGGAGGUUGGCUUAGAAGCAGCCAUCCUUUAAAGAAAGCGUAAUAGCUCACUGGUCGAGUCGGUCUGCGCGGAAGAUGUAACGGGGCUAAACUAUGCACCGAAGCUGCGGAUUCAUCUUAGGAUGAGUGGUAGGGGAGCGUUCUGUAAGCCGUUGAAGGUGUACCGGGAGGUAUGCUGGAGGUAUCAGAAGUGCGAAUGCUGACAUGAGUAACGAUAAUGGGAGUGAAAAACUCCCACGCCGGAAGACCAAGGGUUCCUAUCCCAUGUUAAUCAGGGUAGGGUAAGUCGACCCCUAAGGCGAGGCCGAAAGGCGUAGUCGAUGGGAAACAGAUUAAUAUUUCUGUACUCGAUAUAAUUGCGAUGGGGGGACGGAGCAGGCUAAGCAAGCAUGGCGUUGGUAGUCCAUGUGAAAGUGAGUAGGGCGUUUGUUUAGGUAAAUCCGGACGAACACUAAACCUGAGACACGAGACGAGUCACUAAGGUGAUGAAGUUGCUGAUGCCAUACUUCCAGGAAAAGCCUCUAAGCUUCAGAUUAUAUGGAAUCGUACCCCAAACCGACACAGGUGGUCAGGUAGAGAAUACUAAGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUCGUACCGUAACUUCGGGAGAAGGUACGCUCCUAUCUGUGAUGAGACUUGCUCUCUAAGCGGACGGGAGCCGCAGUGACCAGGUGGCUGGGACUGUUUAUUAAAAACACAGCACUGUGCAAAAUCGCAAGAUGACGUAUACGGUGUGACACCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAUCCUUAGGGAGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGUGUAACCAUGGCCACGCUGUCUCCACCCGAGACUCAGUGAAAUUGAAAUCGCAGUGAAGAUGCUGUGUACCCGCGGCUAGACGGAAAGACCCCGUGAACCUUUACUACAGCUUGGCACUGAACAUUGAACCUACAUGUGUAGGAUAGGUGGGAGACUUUGAAGAUGAGACGCUAGUUUUGUUGGAGUCAACCUUGAAAUACCACCCUUGUAGUUUUGAUGUUCUAACGUUGGCCCCUGAAUCGGGGUUACGGACAGUGCCUGGUGGGUAGUUUGACUGGGGCGGUCUCCUCCUAAAGAGUAACGGAGGAGCACGAAGGUUGGCUAAGUACGGUCGGACAUCGUACGGUUAGUGUAAUGGUAGAAGCCAGCUUAACUGCGAGACAGACACGUCGAGCAGGUACGAAAGUAGGUCAUAGUGAUCCGGUGGUUCUGAAUGGAAGGGCCAUCGCUCAACGGAUAAAAGGUACUCCGGGGAUAACAGGCUGAUACCGCCCAAGAGUUCAUAUCGACGGCGGUGUUUGGCACCUCGAUGUCGGCUCAUCACAUCCUGGGGCUGAAGUCGGUCCCAAGGGUAUGGCUGUUCGCCAUUUAAAGUGGUACGCGAGCUGGGUUUAGAACGUCGUGAGACAGUUCGGUCCCUAUCUGCCGUGGGCGUUUGAGAAUUGAGAGGGGUUGCUCCUAGUACGAGAGGACCGGAGUGAACGAACCGCUGGUGUUCGGGUUGUCAUGCCAAUGGCAUUGCCCGGUAGCUACGUUCGGAACUGAUAAGCGCUGAAAGCAUCUAAGCGCGAAGCAGGCCUCGAGAUGAUUUCUCACUAGAGCUAUAAGCUCUCUGAAGGGCCGUUGGAGACUACAACGUUGAUAGGCAAGAUGUGGAAGUGCUGUGAGGCAUUAAGCUAACUUGUACUAAUUACCCGUGAGGCUUAACCAU |
| 5S rRNA | b | 117 | NA | UGCUUGGUAACAAUAGCGUUUUGGACCCACCUGACCCCAUGCCGAACUCAGUAGUGAAACGAAACAGCGCCGAUGAUAGUGUAGCAUUUGCUAUGUGAAAGUAGGACAUUGCCAGGC |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Large ribosomal subunit protein uL14 | J | 122 | Pseudoalteromonas Translucida Tac125 | MIQMQTQLEVADNSGARKVQCIKVLGGSHRRYAAIGDIIKVSVKEAIPRGKVKKGDVKNAVVVRTKKGVRRPDGSLIRFDSNAAVILNDNLQPIGTRIFGPVTRELRNDKFMKIVSLAPEVL |
| Large ribosomal subunit protein uL15 | K | 144 | Pseudoalteromonas Translucida Tac125 | MHLNTLSPAAGSKTAPKRVGRGIGSGLGKTGGRGHKGQKSRSGGKVRVGFEGGQMPMQRRLPKFGFTSRKSLVSAEINLYEIAKVEGDVVDLSALQAAGLVKKNVLFVKVVKSGEVSRAVTVKGLRATKGAREAIEAAGGKVED |
| Large ribosomal subunit protein uL16 | L | 137 | Pseudoalteromonas Translucida Tac125 | MLQPKRTKFRKTHKGRNRGLAQNGNKVSFGTFGLKATGRGRMTARQIEAARRAMTRHVKRQGKIWIRVFPDKPITNKPLEVRMGKGKGSVEYWVAEIQPGKVLYEMEGVSEELAREAFDLAARKLPFKTTFVTRTVM |
| Large ribosomal subunit protein bL17 | M | 133 | Pseudoalteromonas Translucida Tac125 | MRHRKSGRQLNRNSSHRKAMFSNMAGSLVKHEIIKTTLPKAKELRRVIEPLITLAKTDSVANRRLAFARTRDNEVVGKLFSEIGPRNADRPGGYTRILKCGFRTGDNAPMAYIELVGRPATSEAVQEDAQSAE |
| Large ribosomal subunit protein uL18 | N | 116 | Pseudoalteromonas Translucida Tac125 | MDKKTARLRRAKRTRRNYIEQGTTRLVIHRTPRHIYAQVVTAEGTVLAAASTVEKAICETVKGTGNVAAAQAVGKAVAERAADKGIEKIAFDRSGFKYHGRVKALADAAREAGLQF |
| Large ribosomal subunit protein bL19 | O | 119 | Pseudoalteromonas Translucida Tac125 | MAKVNQNIIKALEDEQLKTDVPAFGAGDTVVVQVKVKEGAKERLQAFEGVVIAKRNRGLHSAFTVRKISNGEGVERVFQTHSPLIDSVTVKRRGAVRRAKLYYLRERSGKSARIREKLN |
| Large ribosomal subunit protein bL20 | P | 120 | Pseudoalteromonas Translucida Tac125 | MARVKRGVVARARHKKVLKQAKGYYGARSRVYRVAFQAVTKAGQYAYRDRRAKKRTFRQLWIARINAASRQNGLSYSRFISGLKKTSVEIDRKILADIAVYDQVAFAALVEKAKEGLAAA |
| Large ribosomal subunit protein bL21 | Q | 103 | Pseudoalteromonas Translucida Tac125 | MYAVFQSGGKQHRVTEGQTIRLEKLDVETGAAVEFDSVLLVADGEKIEIGVPFVNGGKITAEVVSHGRGEKIKVVKFRRRKHSRKQMGHRQWFTEVKITGISA |
| Large ribosomal subunit protein uL22 | R | 110 | Pseudoalteromonas Translucida Tac125 | MQALAKHKFASGSAQKARLVADQIRGLPVDRALEILAYSPKKAAVLVKKVLESAIANAEHNEGADIDELRITTIFVDDGPTMKRIMPRAKGRADRILKRTSHITVMVSDS |
| Large ribosomal subunit protein uL23 | S | 100 | Pseudoalteromonas Translucida Tac125 | MIREERLLKVIVAPHISEKSTIAAEENNTIVFKVAKDSTKAEVKAAVEKLFEVEVTGVRTLNVKGKTKRTGARFGRRNDWKKAYVTLKEGSELDFVGGAE |
| Large ribosomal subunit protein uL24 | T | 104 | Pseudoalteromonas Translucida Tac125 | MAAKIRRDDEVIVLAGKDKGKRGKVLSVVTESGRLFVEGINLIKKHQKPVPQLNQPGGIVEKEASIDVSNVAIYNSETSKADRVGFKIEDGKKLRIFKSTGKTI |
| Large ribosomal subunit protein bL25 | U | 204 | Pseudoalteromonas Translucida Tac125 | MSNKTYVYNAELREQTGTGASRRLRREDKVPAIVYGANKEATSITLDHKDVIKAQESEGFYTQILTLNIGGESVETILKDIQRHPFKPKVTHLDFQRIDANQKLHTIVPIHFVGEDVVEKLGTTVVRQLTEIEISCFPKAIPDFVTVDVSKLVAGDSLHISDVALPAGVSSIDLAKGPGHDQSILIVKANKSAPTEDEAEDAAE |
| Large ribosomal subunit protein bL28 | W | 95 | Pseudoalteromonas Translucida Tac125 | MALGKIKLELSYWRYIDMAKVCQVTGKRPAVGNHRSHARNATKRRFLPNLQTHRFWVESEKRFVTLRTTTKGMRIIDKKGIDTVLTEIRARGVKV |
| Large ribosomal subunit protein uL29 | X | 63 | Pseudoalteromonas Translucida Tac125 | MKASELKDKSVEELNTELLGLLREQFNMRMQASTGQLAQTHTLRTVRRDIARVKTVINQKAGQ |
| Large ribosomal subunit protein bL33 | 0 | 51 | Pseudoalteromonas Translucida Tac125 | MRDKIRLVSTAGTGFFYTTDKNKRNMPEKMEIKKFDPKIRKHVLFKEAKIK |
| Large ribosomal subunit protein bL34 | 1 | 44 | Pseudoalteromonas Translucida Tac125 | MKRTFQPSVLKRKRAHGFRARMATVNGRKVLARRRAKGRKVLSA |
| Large ribosomal subunit protein bL35 | 2 | 66 | Pseudoalteromonas Translucida Tac125 | MAYKLKSHRGAAKRFKKTASGGFKRKQAHLRHILTKKTSKRKLHLRPKMMVHKNDHGLVSRMLPFA |
| Large ribosomal subunit protein bL36 | 3 | 44 | Pseudoalteromonas Translucida Tac125 | MKVLSSLKSAKQRAGCQVVKRKGRVFVICKENPRFKAVQGMKKK |
| Large ribosomal subunit protein uL2 | C | 274 | Pseudoalteromonas Translucida Tac125 | MALQKCKPTSAGRRHLVKVVNSDLHKGKPYAPLLEKNSKSGGRNNNGRITVRHIGGGHKQHYRLIDFKRTKDGIPATVERLEYDPNRSANIALVLYADGERRYIIAPKGLKAGDAIQSGVDAPIKPGNALPMRNMPVGSTVHNVELKPGKGAQIARSAGAYVQILARDGQYVTLRLRSGEVRKVEADCRATLGEVGNAEHMLRSLGKAGANRWRGIRPTVRGVAMNPVDHPHGGGEGRTSGGRHPVSPWGKPTKGAKTRKNKRTDKFIVRRRTK |
| Small ribosomal subunit protein uS4 | D | 206 | Pseudoalteromonas Translucida Tac125 | MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLETAPGQHGARKGRLSDYGLQLREKQKVRRIYGVLEKQFRNYYKEAARLKGNTGENLLQLLEQRLDNVVYRMGFASTRAEARQLVSHKAILVNGRVVNVPSYVIAPEDTVVIREKSKTQARIIAALELAEQREKPTWVEVDGKKLEGSFKRLPERSDLSADINEQLIVELYSK |
| Small ribosomal subunit protein uS5 | E | 168 | Pseudoalteromonas Translucida Tac125 | MANVEAKQQQPDLAEKLIAVNRVSKVVKGGRIFSFTALTVVGDGAGKVGFGYGKAREVPAAIQKAMEKARRNMINVDLNGNTLQHPVKGRHAGSQVFMKPASEGTGIIAGGAMRAVLEVTGVQNVLSKCYGSTNPINVVRATISALENMNSPQSIAAKRGLRIDEILG |
| Small ribosomal subunit protein uS7 | G | 156 | Pseudoalteromonas Translucida Tac125 | MPRRRVIGQRKILPDPKFGSELLAKFVNIVMLDGKKSTAEKIVYGALNVAAEKSGKSHLEIFETALDNIRPQVEVKSRRVGGSTYQVPVEVRPVRRNALGMRWLVDAARKRGEKSMGLRLAQEIVDAADNKGTAVKKREDVHRMAEANKAFAHYRW |
| Small ribosomal subunit protein uS8 | H | 130 | Pseudoalteromonas Translucida Tac125 | MSLQDPIADLFTRIRNGQSAKKVSVTMPNSKLKVAVAKVLKNEGYIADFAINGDVKPELSIELKYFEGKAVIENIQRVSRPGLRIYKRRDELPKVMGGLGIAIVSTSKGLMTDRAARSAGVGGEIIGFVA |
| Small ribosomal subunit protein uS9 | I | 129 | Pseudoalteromonas Translucida Tac125 | MANQYYGTGRRKSSSARVFLRPGTGNIVINKRSLEEYFGRETARMVVHQALELVDMTEKFDLHITVSGGGTTGQAGAIRHGITRALMEFDESLRPQLRKAGFVTRDARKVERKKVGLKKARKRPQFSKR |
| Large ribosomal subunit protein bL27 | V | 85 | Pseudoalteromonas Translucida Tac125 | MAHKKAAGSTRNGRDSESKRLGVKRFGGESVLAGSIIVRQRGTRFHPGTNVGIGKDHTIFAKADGKVQFEQKGPLNRKYVTIVTE |
| Large ribosomal subunit protein uL30 | Y | 60 | Pseudoalteromonas Translucida Tac125 | MANQTVKVTQVKSSIGRLPKHKATLRGLGLRRINHTVELEDTACVRGMINQVSYMVKVEG |
| Large ribosomal subunit protein bL32 | Z | 56 | Pseudoalteromonas Translucida Tac125 | MAVQKSKKSRARRGMRRSHDAISGPSLTVDQTSGETHRRHHVTADGYYKGVQVISK |
| Small ribosomal subunit protein bS6 | F | 113 | Pseudoalteromonas Translucida Tac125 | MRHYEIVFMVHPDQSEQVTGMIERYTGSITEAGGVIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPTEVISELETTFRYNDAVLRNLVMRTKNAVTEASPLVREEKKEAPAA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2024-11-26 Deposition Author(s): Emmerich, A.G. , Godsora, B.K.J. , Majumdar, S. , Sanyal, S. , Singh, V.