9H90
Cryo-em structure of the vibrio natrigens 30s ribosomal subunit in complex with spectinomycin.
PDB DOI: 10.2210/pdb9h90/pdb
Classification: RIBOSOME Organism(s): Vibrio Natriegens
Deposited: 2024-10-29 Deposition Author(s): Bange, G. , Beckert, B. , Koller, T.O. , Lepak, A. , Morici, M. , Raulf, K.F. , Wilson, D.N.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.8 Å
Cryo-em structure of the vibrio natrigens 30s ribosomal subunit in complex with spectinomycin.
Bange, G. , Beckert, B. , Koller, T.O. , Lepak, A. , Morici, M. , Raulf, K.F. , Wilson, D.N.
Primary Citation of Related Structures: 9H90
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 30S ribosomal protein S21 | U | 71 | Vibrio Natriegens | MPVVKVRENEPFDVALRRFKRSCEKAGILSEVRRREHYEKPTTVRKRAKAAAQKRHAKKLARENARRVRLY |
| 30S ribosomal protein S20 | T | 86 | Vibrio Natriegens | MANSKSAKKRAIQAEKRRQHNASRRSMMRTYMKKTVAAIEAGDKEAATAAFAVVTPILDRMATKGLIHKNKAARHKSRFTAQIKAL |
| 30S ribosomal protein S18 | R | 75 | Vibrio Natriegens | MARFFRRRKFCRFTAEGVQEIDYKDVATLKNYITEAGKIVPSRITGTSAKYQRQLARAIKRSRYLALLPYTDKHQ |
| 30S ribosomal protein S17 | Q | 84 | Vibrio Natriegens | MSEVKRTQQGRVVSDKMDKSITVAIERFVKHPIYGKYVKRTTKVHAHDENNECGLGDTVEIAECRPLSKTKSWTLVKVLEKAKI |
| 30S ribosomal protein S16 | P | 82 | Vibrio Natriegens | MVTIRLARHGAKKRPFYQIVVADSRNAATGRFIEKVGFFNPTAKGQEEGLRLDLDRVNHWVGQGASVSDRVAKLVKDAQKAA |
| 30S ribosomal protein S12 | L | 124 | Vibrio Natriegens | MATINQLVRKPRAKQVVKSNVPALEACPQKRGVCTRVYTTTPKKPNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGALDCAGVNDRKQGRSKYGVKRPKS |
| 30S ribosomal protein S11 | K | 129 | Vibrio Natriegens | MAKQPTRARKRVRKQVADGVAHIHASFNNTIVTITDRQGNALAWATAGGSGFRGSRKSTPFAAQVAAERCAEMAKEYGLKNLEVMVKGPGPGRESTVRALNAAGFRITNIVDATPIPHNGCRPPKKRRV |
| 30S ribosomal protein S4 | D | 206 | Vibrio Natriegens | MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARRGRLSEYGVQLREKQKVRRMYGVLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVSHKAILVNGKVVNVPSFKVAANDVVSIREKAKQQSRIKAALEVAEQREKPTWIEVDGGKMEGTFKRMPERSDLSADINEQLIVELYSK |
| 30S ribosomal protein S10 | J | 103 | Vibrio Natriegens | MQNQRIRIRLKAFDYKLIDASTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKKARDQYEIRTHKRLIDIVEPTDKTVDALMRLDLAAGVDVQISLG |
| 30S ribosomal protein S3 | C | 232 | Vibrio Natriegens | MGQKVHPNGIRLGIVKPWNATWFANTKDFADNLDGDFKVRQFLTGELKKASLSRIVIERPAKSIRVTIHTARPGVVIGKKGEDVEKLRAAVAKIAGVPAQINIAEVRKPELDAQLVGDSIASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRADIDYATSSAHTQYGVIGIKTWIFKGEILGGMPAANAVEPKGDKPKKQRKGRK |
| Small ribosomal subunit protein uS7 | G | 156 | Vibrio Natriegens | MPRRRVIGQRKILPDPKFKSELLAKFVNILMVDGKKSTAEKIVYTALDAMAEKSGKDHLAIFEEALENVRPAVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWLVEAARKRGEKSMAQRLAAEMLDASENKGTAVKKREDVHRMADANKAFAHYRW |
| 30S ribosomal protein S15 | O | 89 | Vibrio Natriegens | MSLNAETKAAIVAEYAQSEGDTGSPEVQVALLTASINHLQGHFKAHKGDHHSRRGLLRMVSRRRKLLDYLKGKNLARYQDLIKRLGLRR |
| 30S ribosomal protein S8 | H | 130 | Vibrio Natriegens | MSMQDPISDMLTRVRNGQAANKVAVKMPSSKLKVAIAALLKAEGYIVDFAVEGEAKPELEVTLKYFQAKPVIEQLKRVSRPGLRVYKKKDQLPSVMGGLGIAIVSTSKGLMSDRAARKAGLGGEIICYVA |
| 30S ribosomal protein S6 | F | 129 | Vibrio Natriegens | MRHYEIVFMVHPDQSEQVAGMIERYTGSITEAGGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEADQAVIDELETAFRFNDAVLRNMVMRTKAAITEQSIMLKQKEERAPRREERSEAKPEAKSEAAE |
| 30S ribosomal protein S5 | E | 167 | Vibrio Natriegens | MAKEQQVQANDLQEKLIAVNRVSKTVKGGRIMSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMTTIALNEGTLHHPVKGRHSGSKVYMQPAAEGTGVIAGGAMRAVLEVAGVHNVLSKAYGSTNPINIVRATIDALGSMKSPEMVAAKRGLTVESISE |
| 30S ribosomal protein S9 | I | 130 | Vibrio Natriegens | MAENQYYGTGRRKSSAARVFIKPGSGNIVVNKRNLDEYFGRPTARMVVQQPLELVELTDKLDLYVTVKGGGISGQAGAIRHGITRALMEYDESLRPALRAAGYVTRDARCVERKKVGLRKARRRPQFSKR |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 16S ribosomal RNA | a | 1544 | NA | AAAUUGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAGCGGAAACGAGUUAUCUGAACCUUCGGGGAACGAUAACGGCGUCGAGCGGCGGACGGGUGAGUAAUGCCUAGGAAAUUGCCCUGAUGUGGGGGAUAACCAUUGGAAACGAUGGCUAAUACCGCAUGAUGCCUACGGGCCAAAGAGGGGGACCUUCGGGCCUCUCGCGUCAGGAUAUGCCUAGGUGGGAUUAGCUAGUUGGUGAGGUAAGGGCUCACCAAGGCGACGAUCCCUAGCUGGUCUGAGAGGAUGAUCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGCCAUGCCGCGUGUGUGAAGAAGGCCUUCGGGUUGUAAAGCACUUUCAGUCGUGAGGAAGGUAGUGUAGUUAAUAGCUGCAUUAUUUGACGUUAGCGACAGAAGAAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGCGAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCAUGCAGGUGGUUUGUUAAGUCAGAUGUGAAAGCCCGGGGCUCAACCUCGGAAUAGCAUUUGAAACUGGCAGACUAGAGUACUGUAGAGGGGGGUAGAAUUUCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGAAGGAAUACCGGUGGCGAAGGCGGCCCCCUGGACAGAUACUGACACUCAGAUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGUCUACUUGGAGGUUGUGGCCUUGAGCCGUGGCUUUCGGAGCUAACGCGUUAAGUAGACCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUACUCUUGACAUCCAGAGAACUUUUCAGAGAUGAAUUGGUGCCUUCGGGAACUCUGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAUCCUUGUUUGCCAGCGAGUAAUGUCGGGAACUCCAGGGAGACUGCCGGUGAUAAACCGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGGCCCUUACGAGUAGGGCUACACACGUGCUACAAUGGCGCAUACAGAGGGCGGCCAACUUGCGAAAGUGAGCGAAUCCCAAAAAGUGCGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGUGGAUCAGAAUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGCUGCAAAAGAAGUAGGUAGUUUAACCUUCGGGGGGACGCUUACCACUUUGUGGUUCAUGACUGGGGUGAAGUCGUAACAAGGUAGCGCUAGGGGAACCUGGCGCUGGAUC |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2024-10-29 Deposition Author(s): Bange, G. , Beckert, B. , Koller, T.O. , Lepak, A. , Morici, M. , Raulf, K.F. , Wilson, D.N.