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FASTA Sequence PDB Format mmCIF Format
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9H90

Cryo-em structure of the vibrio natrigens 30s ribosomal subunit in complex with spectinomycin.

PDB DOI: 10.2210/pdb9h90/pdb

Classification: RIBOSOME
Organism(s): Vibrio Natriegens

Deposited: 2024-10-29
Deposition Author(s): Bange, G. , Beckert, B. , Koller, T.O. , Lepak, A. , Morici, M. , Raulf, K.F. , Wilson, D.N.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.8 Å

Literature

Cryo-em structure of the vibrio natrigens 30s ribosomal subunit in complex with spectinomycin.

Bange, G. , Beckert, B. , Koller, T.O. , Lepak, A. , Morici, M. , Raulf, K.F. , Wilson, D.N.

Primary Citation of Related Structures: 9H90


Proteins
Molecule Chains Sequence Length Organism Sequence
30S ribosomal protein S21 U 71 Vibrio Natriegens MPVVKVRENEPFDVALRRFKRSCEKAGILSEVRRREHYEKPTTVRKRAKAAAQKRHAKKLARENARRVRLY
30S ribosomal protein S20 T 86 Vibrio Natriegens MANSKSAKKRAIQAEKRRQHNASRRSMMRTYMKKTVAAIEAGDKEAATAAFAVVTPILDRMATKGLIHKNKAARHKSRFTAQIKAL
30S ribosomal protein S18 R 75 Vibrio Natriegens MARFFRRRKFCRFTAEGVQEIDYKDVATLKNYITEAGKIVPSRITGTSAKYQRQLARAIKRSRYLALLPYTDKHQ
30S ribosomal protein S17 Q 84 Vibrio Natriegens MSEVKRTQQGRVVSDKMDKSITVAIERFVKHPIYGKYVKRTTKVHAHDENNECGLGDTVEIAECRPLSKTKSWTLVKVLEKAKI
30S ribosomal protein S16 P 82 Vibrio Natriegens MVTIRLARHGAKKRPFYQIVVADSRNAATGRFIEKVGFFNPTAKGQEEGLRLDLDRVNHWVGQGASVSDRVAKLVKDAQKAA
30S ribosomal protein S12 L 124 Vibrio Natriegens MATINQLVRKPRAKQVVKSNVPALEACPQKRGVCTRVYTTTPKKPNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGALDCAGVNDRKQGRSKYGVKRPKS
30S ribosomal protein S11 K 129 Vibrio Natriegens MAKQPTRARKRVRKQVADGVAHIHASFNNTIVTITDRQGNALAWATAGGSGFRGSRKSTPFAAQVAAERCAEMAKEYGLKNLEVMVKGPGPGRESTVRALNAAGFRITNIVDATPIPHNGCRPPKKRRV
30S ribosomal protein S4 D 206 Vibrio Natriegens MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARRGRLSEYGVQLREKQKVRRMYGVLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVSHKAILVNGKVVNVPSFKVAANDVVSIREKAKQQSRIKAALEVAEQREKPTWIEVDGGKMEGTFKRMPERSDLSADINEQLIVELYSK
30S ribosomal protein S10 J 103 Vibrio Natriegens MQNQRIRIRLKAFDYKLIDASTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKKARDQYEIRTHKRLIDIVEPTDKTVDALMRLDLAAGVDVQISLG
30S ribosomal protein S3 C 232 Vibrio Natriegens MGQKVHPNGIRLGIVKPWNATWFANTKDFADNLDGDFKVRQFLTGELKKASLSRIVIERPAKSIRVTIHTARPGVVIGKKGEDVEKLRAAVAKIAGVPAQINIAEVRKPELDAQLVGDSIASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRADIDYATSSAHTQYGVIGIKTWIFKGEILGGMPAANAVEPKGDKPKKQRKGRK
Small ribosomal subunit protein uS7 G 156 Vibrio Natriegens MPRRRVIGQRKILPDPKFKSELLAKFVNILMVDGKKSTAEKIVYTALDAMAEKSGKDHLAIFEEALENVRPAVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWLVEAARKRGEKSMAQRLAAEMLDASENKGTAVKKREDVHRMADANKAFAHYRW
30S ribosomal protein S15 O 89 Vibrio Natriegens MSLNAETKAAIVAEYAQSEGDTGSPEVQVALLTASINHLQGHFKAHKGDHHSRRGLLRMVSRRRKLLDYLKGKNLARYQDLIKRLGLRR
30S ribosomal protein S8 H 130 Vibrio Natriegens MSMQDPISDMLTRVRNGQAANKVAVKMPSSKLKVAIAALLKAEGYIVDFAVEGEAKPELEVTLKYFQAKPVIEQLKRVSRPGLRVYKKKDQLPSVMGGLGIAIVSTSKGLMSDRAARKAGLGGEIICYVA
30S ribosomal protein S6 F 129 Vibrio Natriegens MRHYEIVFMVHPDQSEQVAGMIERYTGSITEAGGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEADQAVIDELETAFRFNDAVLRNMVMRTKAAITEQSIMLKQKEERAPRREERSEAKPEAKSEAAE
30S ribosomal protein S5 E 167 Vibrio Natriegens MAKEQQVQANDLQEKLIAVNRVSKTVKGGRIMSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMTTIALNEGTLHHPVKGRHSGSKVYMQPAAEGTGVIAGGAMRAVLEVAGVHNVLSKAYGSTNPINIVRATIDALGSMKSPEMVAAKRGLTVESISE
30S ribosomal protein S9 I 130 Vibrio Natriegens MAENQYYGTGRRKSSAARVFIKPGSGNIVVNKRNLDEYFGRPTARMVVQQPLELVELTDKLDLYVTVKGGGISGQAGAIRHGITRALMEYDESLRPALRAAGYVTRDARCVERKKVGLRKARRRPQFSKR

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
16S ribosomal RNA a 1544 NA AAAUUGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAGCGGAAACGAGUUAUCUGAACCUUCGGGGAACGAUAACGGCGUCGAGCGGCGGACGGGUGAGUAAUGCCUAGGAAAUUGCCCUGAUGUGGGGGAUAACCAUUGGAAACGAUGGCUAAUACCGCAUGAUGCCUACGGGCCAAAGAGGGGGACCUUCGGGCCUCUCGCGUCAGGAUAUGCCUAGGUGGGAUUAGCUAGUUGGUGAGGUAAGGGCUCACCAAGGCGACGAUCCCUAGCUGGUCUGAGAGGAUGAUCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGCCAUGCCGCGUGUGUGAAGAAGGCCUUCGGGUUGUAAAGCACUUUCAGUCGUGAGGAAGGUAGUGUAGUUAAUAGCUGCAUUAUUUGACGUUAGCGACAGAAGAAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGCGAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCAUGCAGGUGGUUUGUUAAGUCAGAUGUGAAAGCCCGGGGCUCAACCUCGGAAUAGCAUUUGAAACUGGCAGACUAGAGUACUGUAGAGGGGGGUAGAAUUUCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGAAGGAAUACCGGUGGCGAAGGCGGCCCCCUGGACAGAUACUGACACUCAGAUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGUCUACUUGGAGGUUGUGGCCUUGAGCCGUGGCUUUCGGAGCUAACGCGUUAAGUAGACCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUACUCUUGACAUCCAGAGAACUUUUCAGAGAUGAAUUGGUGCCUUCGGGAACUCUGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAUCCUUGUUUGCCAGCGAGUAAUGUCGGGAACUCCAGGGAGACUGCCGGUGAUAAACCGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGGCCCUUACGAGUAGGGCUACACACGUGCUACAAUGGCGCAUACAGAGGGCGGCCAACUUGCGAAAGUGAGCGAAUCCCAAAAAGUGCGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGUGGAUCAGAAUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGCUGCAAAAGAAGUAGGUAGUUUAACCUUCGGGGGGACGCUUACCACUUUGUGGUUCAUGACUGGGGUGAAGUCGUAACAAGGUAGCGCUAGGGGAACCUGGCGCUGGAUC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-10-29
Deposition Author(s): Bange, G. , Beckert, B. , Koller, T.O. , Lepak, A. , Morici, M. , Raulf, K.F. , Wilson, D.N.