9H1L
Methyl-coenzyme m reductase activation complex binding to the a2 component after incubation with atp
PDB DOI: 10.2210/pdb9h1l/pdb
Classification: OXIDOREDUCTASE Organism(s): Bothrops Atrox
Deposited: 2024-10-09 Deposition Author(s): Kumar, A. , Paul, S. , Ramirez-Amador, F. , Schuller, J.M.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.14 Å
Methyl-coenzyme m reductase activation complex binding to the a2 component after incubation with atp
Kumar, A. , Paul, S. , Ramirez-Amador, F. , Schuller, J.M.
Primary Citation of Related Structures: 9H1L
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| UPF0288 protein MmarC6_0796 | J | 501 | Bothrops Atrox | MNVLVNNNPKSGKTLEDVIKDEYYIPGSNIVIIKGTATVIKEETKKYLIKTTKGSFVVGITEENETVDFWNKNYKSFEDKSLIWKSISDVSFGSIEIPLPVSSVKQNFKKWDVVLSVSGLDTSEGNLIFVQRDVLELYGLENPKIGILIGGKRVLKTLTADDRIISIEQMRESKENIDYEITTNLNKEIQDTWKIYTYCKAEFDGPPQSTEHALAILENGTLEISENTNTYVADCRLQTLFIDEENPEDRDRGTITVRNIGNGVGKVYIYQESRASSLSHTVVGKVTDGIEIVDFSNSGHITVKTNPERLSVIGKTQKDAKILFEKHGITLKMEGNIDEDAIIVEQVPEYTMDILKSKEVTTKGIEPEKLLYVEIYDKDAPTTSWYFRKVTGLTTKRIGTLKIYFKHDDISMFERDWDYSKGLLPENTPEKSIDSGIIAVTNMVKKYKGYIGVRTSSNDKYGPTGETFEGTNIVGKVVKNSEILKSVKQGENIYILEVNSN |
| Methyl-coenzyme M reductase subunit gamma | A | 260 | Bothrops Atrox | MAYTPQFYPGATKVAENRRNHLNPNYELEKLREIPDEDVVKIMGHRQPGEDYKTVHPPLEEMDFVEDYARDLVEPLNGAKEGHRVRYIQFADSMYFAPAQPYDRSRSYMSRLRGVDAGTLSGRQVVECRESDLEEFSKNILMDTELFDPATSGMRGATVHGHSLRLDENGMMFDALQRCVFDEKTGHVMYVKDQVGKPLDAPVDVGEPIPEAKLREITTIYRNDGVAMRADPDVIEVVKRIHRARTLGGYIPTNETFKGL |
| Methyl-coenzyme M reductase subunit gamma | B | 260 | Bothrops Atrox | MAYTPQFYPGATKVAENRRNHLNPNYELEKLREIPDEDVVKIMGHRQPGEDYKTVHPPLEEMDFVEDYARDLVEPLNGAKEGHRVRYIQFADSMYFAPAQPYDRSRSYMSRLRGVDAGTLSGRQVVECRESDLEEFSKNILMDTELFDPATSGMRGATVHGHSLRLDENGMMFDALQRCVFDEKTGHVMYVKDQVGKPLDAPVDVGEPIPEAKLREITTIYRNDGVAMRADPDVIEVVKRIHRARTLGGYIPTNETFKGL |
| Methyl-coenzyme M reductase subunit beta | E | 443 | Bothrops Atrox | MVKYEDKISLYDAKGNLVAENVPLEAISPLYNPTIKSMVKNIKRTVAVNLAGIEGTLAAGKIGGKGCQVPGRTLDISAVSNAQAIADEVEKILKVSEDDDTAVKIINGGKQLAVQVPTARLEVAAEYSVSMLSTAMALKEALIKTFNIDMFDGSTVHAAIVGNYPQVMDYAGGNIASLLGAPSMMEGLGYALRNIPVNHAVATTKKNMMNAIAFSSVMEQTATFEMGDAVGSFERQHLLGLAYQGLNADNLVIDFIKANAKGTVGSVVETVIDRAIADGVIVVDKTMSSGFNMYKPADVNKWNAYAAAGLVAAVAVSCGAARAAQNVASVILYFNDILEYETGLPGVDYGRSMGTAVGFSFFSHSIYGGGGPGIFNGNHVVTRHSKGFAIPPVCAAMCADAGTQMFSPEHTSGLVGSVYSAFDEFREPMKYVIEGALSIKDQF |
| Methyl-coenzyme M reductase subunit beta | D | 443 | Bothrops Atrox | MVKYEDKISLYDAKGNLVAENVPLEAISPLYNPTIKSMVKNIKRTVAVNLAGIEGTLAAGKIGGKGCQVPGRTLDISAVSNAQAIADEVEKILKVSEDDDTAVKIINGGKQLAVQVPTARLEVAAEYSVSMLSTAMALKEALIKTFNIDMFDGSTVHAAIVGNYPQVMDYAGGNIASLLGAPSMMEGLGYALRNIPVNHAVATTKKNMMNAIAFSSVMEQTATFEMGDAVGSFERQHLLGLAYQGLNADNLVIDFIKANAKGTVGSVVETVIDRAIADGVIVVDKTMSSGFNMYKPADVNKWNAYAAAGLVAAVAVSCGAARAAQNVASVILYFNDILEYETGLPGVDYGRSMGTAVGFSFFSHSIYGGGGPGIFNGNHVVTRHSKGFAIPPVCAAMCADAGTQMFSPEHTSGLVGSVYSAFDEFREPMKYVIEGALSIKDQF |
| Methyl-coenzyme M reductase subunit alpha | C | 553 | Bothrops Atrox | MEAEKRLFLKALKEKFEEDPKEKYTKFYTFGGWEQSARKREFVEANEKIVSEKRQGIPLYNPDIGVPLGQRKLMPYKLSNTDDYCEGDDLHFLNNAAIQQLWDDIRRTVIVGMDTAHSVLEKRLGVEVTPETINEYMHTINHSLPGGAVVQEHMVEVHPSLAWDCYARIFTGDDELADELDSRFLIDINKLFPEEQAETLKAAIGKKTYQVSRVPSLVGRVCDGGTISRWSAMQIGMSFITAYKLCAGEAATADFSYASKHADVIQMGNALPGRRARGPNEPGGIRFGILSDVVQTTRVSEDPVEQSLEVVATGAALYDQIWLGAYMSGGIGFTQYATASYTDDILDDFSYYALDYVEKKYGRMGTKATMDVVEDVAGEVTLYALEQYDDYPALLEDHFGGSQRAAVAAAASGIGVCMATGNSNAGVNGWYLSQILHKEYHSRLGFYGYDLQDQCGASNSLAIRNDEAAPLELRGPNYPNYAMNVGHQGEYAGIAQAAHSARGDAFALNPLVKVAFADPMLVFDFSKPRKEIARGALREFEAAGERDVILPAK |
| Methyl-coenzyme M reductase subunit alpha | F | 553 | Bothrops Atrox | MEAEKRLFLKALKEKFEEDPKEKYTKFYTFGGWEQSARKREFVEANEKIVSEKRQGIPLYNPDIGVPLGQRKLMPYKLSNTDDYCEGDDLHFLNNAAIQQLWDDIRRTVIVGMDTAHSVLEKRLGVEVTPETINEYMHTINHSLPGGAVVQEHMVEVHPSLAWDCYARIFTGDDELADELDSRFLIDINKLFPEEQAETLKAAIGKKTYQVSRVPSLVGRVCDGGTISRWSAMQIGMSFITAYKLCAGEAATADFSYASKHADVIQMGNALPGRRARGPNEPGGIRFGILSDVVQTTRVSEDPVEQSLEVVATGAALYDQIWLGAYMSGGIGFTQYATASYTDDILDDFSYYALDYVEKKYGRMGTKATMDVVEDVAGEVTLYALEQYDDYPALLEDHFGGSQRAAVAAAASGIGVCMATGNSNAGVNGWYLSQILHKEYHSRLGFYGYDLQDQCGASNSLAIRNDEAAPLELRGPNYPNYAMNVGHQGEYAGIAQAAHSARGDAFALNPLVKVAFADPMLVFDFSKPRKEIARGALREFEAAGERDVILPAK |
| Methanogenesis marker protein 17 | G | 183 | Bothrops Atrox | MAYIDVECNDEAGKAIYERIIQTSLEDLVLGKSIIKAKMICKQDVPYFIIGILPKSTSKLIRLRDIATIDESKKSDGKTITKLNIDDETYATELLAKINVMDQPSRFEVVTDSEVDLNMVIHDAKEDFIDRVLDFMNRVFPEGMRIRKTIRDKTIVMVASEKPIEEEWMNEAVKLQEELKIFK |
| Methanogenesis marker protein 7 | H | 304 | Bothrops Atrox | MYQIIRYEGGVYKNNILKEWIEDVGGFIIQEHVMQLDVYMTIAIPQNEIENFKEEAKKYKGKIVETPLAGIEIAIVSPSLSRHHLPHIACDVSEYVRKFGAKPNMIGLAHGAGKNISEIREKEKRLIQEHDIAIYVMGNFESCILDKTHLFKVDIPLVVTGGPETLDIPYTYVGNLGRRAQRLRKGEEIRALRQMIDEVTKKINDKRMELSYDPPIIPPVVLKDEIEKRIDEVRGILAPMPIVTQLDGLRIKMDYDRNHEEIENVKIGKYLLKDIAYVTRSEMKNYILIKLKSTSELKTDENKA |
| Methyl-coenzyme M reductase operon protein C | I | 234 | Bothrops Atrox | MSAWSHPQFEKGGGSGGGSGGSAWSHPQFEKSAGSGMPVGRKEQIVDCRAVMGLGEGGGLAQRGTFAEGLRNDVVVVAMSPGRRHITKPVCEITYGIREAGIQTSVLVLDAGGGIPSDAPQGSLGSTFGLKPEEAKQVNRHKLCVIHFGNVKSHIIYKARLFLKYVDIPTIIVCQTPVDMEDFAAIGIKTKNVMPLESKTEGKIVEIITGVIRGESAPQKKIDEIIESIKKHLG |
| Glycine betaine/carnitine/choline transport ATP-binding protein OpuCA | K | 531 | Bothrops Atrox | MLLLEVKNVSKSYGDTEVLKNVSFELNEGDVMGVLGRSGAGKSVLLHMLRGMEGYEPTSGQIIYHVAYCPHCENVEAPSQVGKKCECETEYVAKSVDFWNNNEITYALKKKIAIMLQRTFALYGEKTVAENIMEALTAAGYEGKDATEWALNLIKMVKLEHRVAHISRDLSGGEKQRVVLARQIAKNPVIFLADEPTGTLDPKTAKFVHNALTEAVIKHNIAMVITSHWPEVIEELCQKAIWLDKGEMRLVGESKHVVEEFMKTVTSMKEFEKVEVKDELLKLENVEKRYVSVDRGIVKAVDGIDVSINEKEIFGLVGVSGAGKTTLSKIIAAVIPPSKGNYEFRLADEWVDMTKVGPLYRGRAKRYIGMLFQEYSLYPHRTILYNLTESIGLEMPGEFAKMKAEHTLVSVGFTEEEAENMLEKHPSELSVGEKHRVALAQVLIREPHLILLDEPTGTMDPITRNQVAESIQKSRSELDQTYVIVSHDMDFVLNVCDRAALVRGGKIIKTGKPDEIVKILSEEEKDEMIGH |
| DUF2098 domain-containing protein | L | 93 | Bothrops Atrox | MTLDRNGKLIEIGSYVRYINTGTHGTVKAIEPKNDEEWVLLENDIYYRPELLELVERRKIEKKESEEELIERITNEDIDLEAAENGCGCSGAG |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2024-10-09 Deposition Author(s): Kumar, A. , Paul, S. , Ramirez-Amador, F. , Schuller, J.M.