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9GO0

Cryo-em structure of shcas12k in complex with a sgrna and a dsdna target

PDB DOI: 10.2210/pdb9go0/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Scytonema Hofmannii , Synthetic Construct

Deposited: 2024-09-04
Deposition Author(s): Chanez, C. , Jinek, M. , Oberli, S. , Querques, I. , Schmitz, M.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.04 Å

Literature

Cryo-em structure of shcas12k in complex with a sgrna and a dsdna target

Chanez, C. , Jinek, M. , Oberli, S. , Querques, I. , Schmitz, M.

Primary Citation of Related Structures: 9GO0


Proteins
Molecule Chains Sequence Length Organism Sequence
Cas12k A 641 Scytonema Hofmannii , Synthetic Construct SNASQITIQARLISFESNRQQLWKLMADLNTPLINELLCQLGQHPDFEKWQQKGKLPSTVVSQLCQPLKTDPRFAGQPSRLYMSAIHIVDYIYKSWLAIQKRLQQQLDGKTRWLEMLNSDAELVELSGDTLEAIRVKAAEILAIAMPASESDSASPKGKKGKKEKKPSSSSPKRSLSKTLFDAYQETEDIKSRSAISYLLKNGCKLTDKEEDSEKFAKRRRQVEIQIQRLTEKLISRMPKGRDLTNAKWLETLLTATTTVAEDNAQAKRWQDILLTRSSSLPFPLVFETNEDMVWSKNQKGRLCVHFNGLSDLIFEVYCGNRQLHWFQRFLEDQQTKRKSKNQHSSGLFTLRNGHLVWLEGEGKGEPWNLHHLTLYCCVDNRLWTEEGTEIVRQEKADEITKFITNMKKKSDLSDTQQALIQRKQSTLTRINNSFERPSQPLYQGQSHILVGVSLGLEKPATVAVVDAIANKVLAYRSIKQLLGDNYELLNRQRRQQQYLSHERHKAQKNFSPNQFGASELGQHIDRLLAKAIVALARTYKAGSIVLPKLGDMREVVQSEIQAIAEQKFPGYIEGQQKYAKQYRVNVHRWSYGRLIQSIQSKAAQTGIVIEEGKQPIRGSPHDKAKELALSAYNLRLTRRS

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
sgRNA b 256 NA GGAUAUUAAUAGCGCCGCAAUUCAUGCUGCUUGCAGCCUCUGAAUUUUGUUAAAUGAGGGUUAGUUUGACUGUAUAAAUACAGUCUUGCUUUCUGACCCUGGUAGCUGCUCACCCUGAUGCUGCUGUCAAUAGACAGGAUAGGUGCGCUCCCAGCAAUAAGGGCGCGGAUGUACUGCUGUAGUGGCUACUGAAUCACCCCCGAUCAAGGGGGAACCCUAAAUGGGUUGAAAGGAGAAGUCAUUUAAUAAGGCCACU
DNA target strand c 50 NA GTTTAACAGTGGCCTTATTAAATGACTTCTCAACCTCCTACGTATCGTAG
DNA non-target strand d 50 NA CTACGATACGTAGGAGGTTGAGAAGTCATTTAATAAGGCCACTGTTAAAC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-09-04
Deposition Author(s): Chanez, C. , Jinek, M. , Oberli, S. , Querques, I. , Schmitz, M.