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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9GMK

Sirt7:h3k18dtu nucleosome complex

PDB DOI: 10.2210/pdb9gmk/pdb

Classification: DNA
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2024-08-29
Deposition Author(s): Calvino-Sanles, E. , Ekundayo, B. , Fierz, B. , Foteva, P. , Moreno-Yruela, C. , Ni, D. , Stahlberg, H.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.5 Å

9gmk
Literature

Sirt7:h3k18dtu nucleosome complex

Calvino-Sanles, E. , Ekundayo, B. , Fierz, B. , Foteva, P. , Moreno-Yruela, C. , Ni, D. , Stahlberg, H.

Primary Citation of Related Structures: 9GMK


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.2 A 136 Homo Sapiens , Synthetic Construct MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVCLREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLAAIHAKRVTIMPKDIQLARRIRGERA
Histone H3.2 E 136 Homo Sapiens , Synthetic Construct MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVCLREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLAAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 103 Homo Sapiens , Synthetic Construct MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 103 Homo Sapiens , Synthetic Construct MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A type 2-A C 129 Homo Sapiens , Synthetic Construct SGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHKAKGK
Histone H2A type 2-A G 129 Homo Sapiens , Synthetic Construct SGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHKAKGK
Histone H2B type 1-J D 126 Homo Sapiens , Synthetic Construct MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone H2B type 1-J H 126 Homo Sapiens , Synthetic Construct MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
NAD-dependent protein deacetylase sirtuin-7 K 401 Homo Sapiens , Synthetic Construct GMAAGGLSRSERKAAERVRRLREEQQRERLRQVSRILRKAAAERSAEEGRLLAESADLVTELQGRSRRREGLKRRQEEVCDDPEELRGKVRELASAVRNAKYLVVYTGAGISTAASIPDYRGPNGVWTLLQKGRSVSAADLSEAEPTLTHMSITRLHEQKLVQHVVSQNCDGLHLRSGLPRTAISELHGNMYIEVCTSCVPNREYVRVFDVTERTALHRHQTGRTCHKCGTQLRDTIVHFGERGTLGQPLNWEAATEAASRADTILCLGSSLKVLKKYPRLWCMTKPPSRRPKLYIVNLQWTPKDDWAALKLHGKCDDVMRLLMAELGLEIPAYSRWQDPIFSLATPLRAGEEGSHSRKSLCRSREEAPPGDRGAPLSSAPILGGWFGRGCTKRTKRKKVT

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (148-MER) l 148 NA AGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACAATTTTTTTTTT
DNA (148-MER) m 148 NA AAAAAAAAAATTGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-08-29
Deposition Author(s): Calvino-Sanles, E. , Ekundayo, B. , Fierz, B. , Foteva, P. , Moreno-Yruela, C. , Ni, D. , Stahlberg, H.