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9GFM

Cryoem structure of the human ino80 core-nucleosome complex state n-7

PDB DOI: 10.2210/pdb9gfm/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2024-08-09
Deposition Author(s): Aggarwal, P. , Hopfner, K.P. , Sharma, M.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.8 Å

9gfm
Literature

Cryoem structure of the human ino80 core-nucleosome complex state n-7

Aggarwal, P. , Hopfner, K.P. , Sharma, M.

Primary Citation of Related Structures: 9GFM


Proteins
Molecule Chains Sequence Length Organism Sequence
INO80 complex subunit B H 50 Homo Sapiens , Synthetic Construct GLGGQEEEEEQRWLDALEKGELDDNGDLKKEINERLLTARQRALLQKARS
Histone H2A type 1-B/E S 111 Homo Sapiens , Synthetic Construct GKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPK
Histone H2B type 2-E T 93 Homo Sapiens , Synthetic Construct RSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS
Histone H3.1 M 93 Homo Sapiens , Synthetic Construct PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 N 82 Homo Sapiens , Synthetic Construct VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A type 1-B/E O 106 Homo Sapiens , Synthetic Construct KAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPK
Histone H2B type 2-E P 96 Homo Sapiens , Synthetic Construct KRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone H3.1 Q 100 Homo Sapiens , Synthetic Construct KKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 R 79 Homo Sapiens , Synthetic Construct DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Nucleosomal DNA strand 1 k 139 NA ACATGCACAGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCA
Nucleosomal DNA strand 2 l 139 NA TGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCTGTGCATGT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-08-09
Deposition Author(s): Aggarwal, P. , Hopfner, K.P. , Sharma, M.