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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9GB7

Extended phicd508 neck

PDB DOI: 10.2210/pdb9gb7/pdb

Classification: VIRUS
Organism(s): Clostridioides Difficile

Deposited: 2024-07-29
Deposition Author(s): Bullough, P.A. , Fagan, R.P. , Wilson, J.S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.4 Å

9gb7
Literature

Extended phicd508 neck

Bullough, P.A. , Fagan, R.P. , Wilson, J.S.

Primary Citation of Related Structures: 9GB7


Proteins
Molecule Chains Sequence Length Organism Sequence
gp50 - Portal adaptor protein A 112 Clostridioides Difficile MTPARDLIEKLRLLLNDKDKKSFTDEELNLFLEEADCIYCAASQGWILKSLQYENTVGEMYEYKVGQETYKSSSIKDLVSVAYQNADKFKDMCTNKKEKGSFMLGISTEFEI
gp50 - Portal adaptor protein B 112 Clostridioides Difficile MTPARDLIEKLRLLLNDKDKKSFTDEELNLFLEEADCIYCAASQGWILKSLQYENTVGEMYEYKVGQETYKSSSIKDLVSVAYQNADKFKDMCTNKKEKGSFMLGISTEFEI
gp50 - Portal adaptor protein C 112 Clostridioides Difficile MTPARDLIEKLRLLLNDKDKKSFTDEELNLFLEEADCIYCAASQGWILKSLQYENTVGEMYEYKVGQETYKSSSIKDLVSVAYQNADKFKDMCTNKKEKGSFMLGISTEFEI
gp53 - Tail adaptor protein D 273 Clostridioides Difficile MRAGIRKALIDNIKELKGCYEPNVPNKDTKKPYMVVVQGQDNDHGETIGFERSIEVWIYEGRTTFKKLDKLTKQVVEVLDMNTIVDESENEAFTCIYKGTSENDIVVEEWDAIARGIRFSVIALEDKEDTTNDRWVEALSRHTKDLLEIESYKDNWKKNFIAPCALWRTTHIENKRINYHLIEITKTMKCHVVSKNKDEIVKLLETLETSLIIDKRVRLREDKNMYLTLVSVVEDRESDMFTTGQLTAVFKMIGKIKREGPTMDKIYGNGNLK
gp55 - Tail sheath protein E 473 Clostridioides Difficile MATGTWNEKERKEIPGFYNRFKTQAEKSTNTGLKGRLAMPIRANWGDVGKVVTIKNDLRQLKNLFGDDMNYSAFKLGKLALLGNVKELLLYRLVDGNQKKGTLTLKDTTENSAKDVIKLETKYPTARNFNVTIKSNLVDSDKKDFIFFENTKQLFSSSIKGTIDEIVLEINSNLDNEYVIATKVADSDTILANVVNQALEGGNDGCTSITNESYLKALEEFERYSFDSFVLDGVADEALQETTKAWVAKNKELGKDILLFLGGKTEDNIKQINDKSKSFNDENIVNVGSSAYYENIKYTPSEVAVYIAALSVSKGITGSICNAKTIFEEVEPRLSQSEVKECLKSGTLVLDFDDGDVIIVDDVNTFKKYVDDKNEAMGYISNIMFINTINKDTSLKRKEFVGKIFNDATGQTTVICALKKYFEELMSQGIISEFNVDIDTELQATAKADEFYWKWDAVKVDVMKKIYGTGYLG
gp55 - Tail sheath protein F 473 Clostridioides Difficile MATGTWNEKERKEIPGFYNRFKTQAEKSTNTGLKGRLAMPIRANWGDVGKVVTIKNDLRQLKNLFGDDMNYSAFKLGKLALLGNVKELLLYRLVDGNQKKGTLTLKDTTENSAKDVIKLETKYPTARNFNVTIKSNLVDSDKKDFIFFENTKQLFSSSIKGTIDEIVLEINSNLDNEYVIATKVADSDTILANVVNQALEGGNDGCTSITNESYLKALEEFERYSFDSFVLDGVADEALQETTKAWVAKNKELGKDILLFLGGKTEDNIKQINDKSKSFNDENIVNVGSSAYYENIKYTPSEVAVYIAALSVSKGITGSICNAKTIFEEVEPRLSQSEVKECLKSGTLVLDFDDGDVIIVDDVNTFKKYVDDKNEAMGYISNIMFINTINKDTSLKRKEFVGKIFNDATGQTTVICALKKYFEELMSQGIISEFNVDIDTELQATAKADEFYWKWDAVKVDVMKKIYGTGYLG
gp55 - Tail sheath protein G 473 Clostridioides Difficile MATGTWNEKERKEIPGFYNRFKTQAEKSTNTGLKGRLAMPIRANWGDVGKVVTIKNDLRQLKNLFGDDMNYSAFKLGKLALLGNVKELLLYRLVDGNQKKGTLTLKDTTENSAKDVIKLETKYPTARNFNVTIKSNLVDSDKKDFIFFENTKQLFSSSIKGTIDEIVLEINSNLDNEYVIATKVADSDTILANVVNQALEGGNDGCTSITNESYLKALEEFERYSFDSFVLDGVADEALQETTKAWVAKNKELGKDILLFLGGKTEDNIKQINDKSKSFNDENIVNVGSSAYYENIKYTPSEVAVYIAALSVSKGITGSICNAKTIFEEVEPRLSQSEVKECLKSGTLVLDFDDGDVIIVDDVNTFKKYVDDKNEAMGYISNIMFINTINKDTSLKRKEFVGKIFNDATGQTTVICALKKYFEELMSQGIISEFNVDIDTELQATAKADEFYWKWDAVKVDVMKKIYGTGYLG
gp45 - Portal protein K 500 Clostridioides Difficile MGIISYVKKLFKRPAGEIMRMSSGNIGVYKLDDSRVDYELARELYQNKNANYKLGSSFVRPIVNSTTGFMGVPHFQIEDEEAQYILDEFVLDNTSKMLKTHTDSLKQGDCYIWITREERENPLYPDKKVRLIYNFISPEEVKEIILDPTTKEPIAYILESQNEWTDLGENKRKAKVKQIITAESRFVEVEGDKIEGLEEGETPNVWGFIPIIHFKNEADETLKYGQSDIEPIEPLLKAYHDVMLHALKGSKMHSTPKLKLKLTDVASFLAHNFGVEDPVKFAKEGGKINLDGHEILFLNKDEEAEFVEVKSAIGDAKELLKLLFYCIVDVSETPEFIFGVHTPSALASVKEQMPIMVNKIRRKREQFTNSWQLLARMVLIMSSNSSGMKYSSYDVTIGWDEVNPRDDKELAETLEKVCCALDKALEGGFISEESTVNFLAQYIDTMSNYISDDPEREGEREKIIKTKMLKYRLDDSQGLNDESNEIEKEINKIKDNNGNG
gp45 - Portal protein M 500 Clostridioides Difficile MGIISYVKKLFKRPAGEIMRMSSGNIGVYKLDDSRVDYELARELYQNKNANYKLGSSFVRPIVNSTTGFMGVPHFQIEDEEAQYILDEFVLDNTSKMLKTHTDSLKQGDCYIWITREERENPLYPDKKVRLIYNFISPEEVKEIILDPTTKEPIAYILESQNEWTDLGENKRKAKVKQIITAESRFVEVEGDKIEGLEEGETPNVWGFIPIIHFKNEADETLKYGQSDIEPIEPLLKAYHDVMLHALKGSKMHSTPKLKLKLTDVASFLAHNFGVEDPVKFAKEGGKINLDGHEILFLNKDEEAEFVEVKSAIGDAKELLKLLFYCIVDVSETPEFIFGVHTPSALASVKEQMPIMVNKIRRKREQFTNSWQLLARMVLIMSSNSSGMKYSSYDVTIGWDEVNPRDDKELAETLEKVCCALDKALEGGFISEESTVNFLAQYIDTMSNYISDDPEREGEREKIIKTKMLKYRLDDSQGLNDESNEIEKEINKIKDNNGNG
gp45 - Portal protein O 500 Clostridioides Difficile MGIISYVKKLFKRPAGEIMRMSSGNIGVYKLDDSRVDYELARELYQNKNANYKLGSSFVRPIVNSTTGFMGVPHFQIEDEEAQYILDEFVLDNTSKMLKTHTDSLKQGDCYIWITREERENPLYPDKKVRLIYNFISPEEVKEIILDPTTKEPIAYILESQNEWTDLGENKRKAKVKQIITAESRFVEVEGDKIEGLEEGETPNVWGFIPIIHFKNEADETLKYGQSDIEPIEPLLKAYHDVMLHALKGSKMHSTPKLKLKLTDVASFLAHNFGVEDPVKFAKEGGKINLDGHEILFLNKDEEAEFVEVKSAIGDAKELLKLLFYCIVDVSETPEFIFGVHTPSALASVKEQMPIMVNKIRRKREQFTNSWQLLARMVLIMSSNSSGMKYSSYDVTIGWDEVNPRDDKELAETLEKVCCALDKALEGGFISEESTVNFLAQYIDTMSNYISDDPEREGEREKIIKTKMLKYRLDDSQGLNDESNEIEKEINKIKDNNGNG
gp45 - Portal protein Q 500 Clostridioides Difficile MGIISYVKKLFKRPAGEIMRMSSGNIGVYKLDDSRVDYELARELYQNKNANYKLGSSFVRPIVNSTTGFMGVPHFQIEDEEAQYILDEFVLDNTSKMLKTHTDSLKQGDCYIWITREERENPLYPDKKVRLIYNFISPEEVKEIILDPTTKEPIAYILESQNEWTDLGENKRKAKVKQIITAESRFVEVEGDKIEGLEEGETPNVWGFIPIIHFKNEADETLKYGQSDIEPIEPLLKAYHDVMLHALKGSKMHSTPKLKLKLTDVASFLAHNFGVEDPVKFAKEGGKINLDGHEILFLNKDEEAEFVEVKSAIGDAKELLKLLFYCIVDVSETPEFIFGVHTPSALASVKEQMPIMVNKIRRKREQFTNSWQLLARMVLIMSSNSSGMKYSSYDVTIGWDEVNPRDDKELAETLEKVCCALDKALEGGFISEESTVNFLAQYIDTMSNYISDDPEREGEREKIIKTKMLKYRLDDSQGLNDESNEIEKEINKIKDNNGNG
gp51 - Neck valve protein X 125 Clostridioides Difficile MINIDRRRKDIIRTININPTNITITSIKKTEIDGAFEETETEIKCVVRIFNEKTAEKQISSEKQGTFSSIRTYGMLVSNDVILEVNSRDSLEFECIYGRMKIVNIYPQIVKGELCGYQCSLERID
gp55 - Tail sheath protein H 473 Clostridioides Difficile MATGTWNEKERKEIPGFYNRFKTQAEKSTNTGLKGRLAMPIRANWGDVGKVVTIKNDLRQLKNLFGDDMNYSAFKLGKLALLGNVKELLLYRLVDGNQKKGTLTLKDTTENSAKDVIKLETKYPTARNFNVTIKSNLVDSDKKDFIFFENTKQLFSSSIKGTIDEIVLEINSNLDNEYVIATKVADSDTILANVVNQALEGGNDGCTSITNESYLKALEEFERYSFDSFVLDGVADEALQETTKAWVAKNKELGKDILLFLGGKTEDNIKQINDKSKSFNDENIVNVGSSAYYENIKYTPSEVAVYIAALSVSKGITGSICNAKTIFEEVEPRLSQSEVKECLKSGTLVLDFDDGDVIIVDDVNTFKKYVDDKNEAMGYISNIMFINTINKDTSLKRKEFVGKIFNDATGQTTVICALKKYFEELMSQGIISEFNVDIDTELQATAKADEFYWKWDAVKVDVMKKIYGTGYLG
gp45 - Portal protein L 500 Clostridioides Difficile MGIISYVKKLFKRPAGEIMRMSSGNIGVYKLDDSRVDYELARELYQNKNANYKLGSSFVRPIVNSTTGFMGVPHFQIEDEEAQYILDEFVLDNTSKMLKTHTDSLKQGDCYIWITREERENPLYPDKKVRLIYNFISPEEVKEIILDPTTKEPIAYILESQNEWTDLGENKRKAKVKQIITAESRFVEVEGDKIEGLEEGETPNVWGFIPIIHFKNEADETLKYGQSDIEPIEPLLKAYHDVMLHALKGSKMHSTPKLKLKLTDVASFLAHNFGVEDPVKFAKEGGKINLDGHEILFLNKDEEAEFVEVKSAIGDAKELLKLLFYCIVDVSETPEFIFGVHTPSALASVKEQMPIMVNKIRRKREQFTNSWQLLARMVLIMSSNSSGMKYSSYDVTIGWDEVNPRDDKELAETLEKVCCALDKALEGGFISEESTVNFLAQYIDTMSNYISDDPEREGEREKIIKTKMLKYRLDDSQGLNDESNEIEKEINKIKDNNGNG
gp45 - Portal protein N 500 Clostridioides Difficile MGIISYVKKLFKRPAGEIMRMSSGNIGVYKLDDSRVDYELARELYQNKNANYKLGSSFVRPIVNSTTGFMGVPHFQIEDEEAQYILDEFVLDNTSKMLKTHTDSLKQGDCYIWITREERENPLYPDKKVRLIYNFISPEEVKEIILDPTTKEPIAYILESQNEWTDLGENKRKAKVKQIITAESRFVEVEGDKIEGLEEGETPNVWGFIPIIHFKNEADETLKYGQSDIEPIEPLLKAYHDVMLHALKGSKMHSTPKLKLKLTDVASFLAHNFGVEDPVKFAKEGGKINLDGHEILFLNKDEEAEFVEVKSAIGDAKELLKLLFYCIVDVSETPEFIFGVHTPSALASVKEQMPIMVNKIRRKREQFTNSWQLLARMVLIMSSNSSGMKYSSYDVTIGWDEVNPRDDKELAETLEKVCCALDKALEGGFISEESTVNFLAQYIDTMSNYISDDPEREGEREKIIKTKMLKYRLDDSQGLNDESNEIEKEINKIKDNNGNG
gp45 - Portal protein P 500 Clostridioides Difficile MGIISYVKKLFKRPAGEIMRMSSGNIGVYKLDDSRVDYELARELYQNKNANYKLGSSFVRPIVNSTTGFMGVPHFQIEDEEAQYILDEFVLDNTSKMLKTHTDSLKQGDCYIWITREERENPLYPDKKVRLIYNFISPEEVKEIILDPTTKEPIAYILESQNEWTDLGENKRKAKVKQIITAESRFVEVEGDKIEGLEEGETPNVWGFIPIIHFKNEADETLKYGQSDIEPIEPLLKAYHDVMLHALKGSKMHSTPKLKLKLTDVASFLAHNFGVEDPVKFAKEGGKINLDGHEILFLNKDEEAEFVEVKSAIGDAKELLKLLFYCIVDVSETPEFIFGVHTPSALASVKEQMPIMVNKIRRKREQFTNSWQLLARMVLIMSSNSSGMKYSSYDVTIGWDEVNPRDDKELAETLEKVCCALDKALEGGFISEESTVNFLAQYIDTMSNYISDDPEREGEREKIIKTKMLKYRLDDSQGLNDESNEIEKEINKIKDNNGNG
gp45 - Portal protein R 500 Clostridioides Difficile MGIISYVKKLFKRPAGEIMRMSSGNIGVYKLDDSRVDYELARELYQNKNANYKLGSSFVRPIVNSTTGFMGVPHFQIEDEEAQYILDEFVLDNTSKMLKTHTDSLKQGDCYIWITREERENPLYPDKKVRLIYNFISPEEVKEIILDPTTKEPIAYILESQNEWTDLGENKRKAKVKQIITAESRFVEVEGDKIEGLEEGETPNVWGFIPIIHFKNEADETLKYGQSDIEPIEPLLKAYHDVMLHALKGSKMHSTPKLKLKLTDVASFLAHNFGVEDPVKFAKEGGKINLDGHEILFLNKDEEAEFVEVKSAIGDAKELLKLLFYCIVDVSETPEFIFGVHTPSALASVKEQMPIMVNKIRRKREQFTNSWQLLARMVLIMSSNSSGMKYSSYDVTIGWDEVNPRDDKELAETLEKVCCALDKALEGGFISEESTVNFLAQYIDTMSNYISDDPEREGEREKIIKTKMLKYRLDDSQGLNDESNEIEKEINKIKDNNGNG
gp55 - Tail sheath protein I 473 Clostridioides Difficile MATGTWNEKERKEIPGFYNRFKTQAEKSTNTGLKGRLAMPIRANWGDVGKVVTIKNDLRQLKNLFGDDMNYSAFKLGKLALLGNVKELLLYRLVDGNQKKGTLTLKDTTENSAKDVIKLETKYPTARNFNVTIKSNLVDSDKKDFIFFENTKQLFSSSIKGTIDEIVLEINSNLDNEYVIATKVADSDTILANVVNQALEGGNDGCTSITNESYLKALEEFERYSFDSFVLDGVADEALQETTKAWVAKNKELGKDILLFLGGKTEDNIKQINDKSKSFNDENIVNVGSSAYYENIKYTPSEVAVYIAALSVSKGITGSICNAKTIFEEVEPRLSQSEVKECLKSGTLVLDFDDGDVIIVDDVNTFKKYVDDKNEAMGYISNIMFINTINKDTSLKRKEFVGKIFNDATGQTTVICALKKYFEELMSQGIISEFNVDIDTELQATAKADEFYWKWDAVKVDVMKKIYGTGYLG
gp55 - Tail sheath protein J 473 Clostridioides Difficile MATGTWNEKERKEIPGFYNRFKTQAEKSTNTGLKGRLAMPIRANWGDVGKVVTIKNDLRQLKNLFGDDMNYSAFKLGKLALLGNVKELLLYRLVDGNQKKGTLTLKDTTENSAKDVIKLETKYPTARNFNVTIKSNLVDSDKKDFIFFENTKQLFSSSIKGTIDEIVLEINSNLDNEYVIATKVADSDTILANVVNQALEGGNDGCTSITNESYLKALEEFERYSFDSFVLDGVADEALQETTKAWVAKNKELGKDILLFLGGKTEDNIKQINDKSKSFNDENIVNVGSSAYYENIKYTPSEVAVYIAALSVSKGITGSICNAKTIFEEVEPRLSQSEVKECLKSGTLVLDFDDGDVIIVDDVNTFKKYVDDKNEAMGYISNIMFINTINKDTSLKRKEFVGKIFNDATGQTTVICALKKYFEELMSQGIISEFNVDIDTELQATAKADEFYWKWDAVKVDVMKKIYGTGYLG
gp45 - Portal protein S 500 Clostridioides Difficile MGIISYVKKLFKRPAGEIMRMSSGNIGVYKLDDSRVDYELARELYQNKNANYKLGSSFVRPIVNSTTGFMGVPHFQIEDEEAQYILDEFVLDNTSKMLKTHTDSLKQGDCYIWITREERENPLYPDKKVRLIYNFISPEEVKEIILDPTTKEPIAYILESQNEWTDLGENKRKAKVKQIITAESRFVEVEGDKIEGLEEGETPNVWGFIPIIHFKNEADETLKYGQSDIEPIEPLLKAYHDVMLHALKGSKMHSTPKLKLKLTDVASFLAHNFGVEDPVKFAKEGGKINLDGHEILFLNKDEEAEFVEVKSAIGDAKELLKLLFYCIVDVSETPEFIFGVHTPSALASVKEQMPIMVNKIRRKREQFTNSWQLLARMVLIMSSNSSGMKYSSYDVTIGWDEVNPRDDKELAETLEKVCCALDKALEGGFISEESTVNFLAQYIDTMSNYISDDPEREGEREKIIKTKMLKYRLDDSQGLNDESNEIEKEINKIKDNNGNG
gp45 - Portal protein T 500 Clostridioides Difficile MGIISYVKKLFKRPAGEIMRMSSGNIGVYKLDDSRVDYELARELYQNKNANYKLGSSFVRPIVNSTTGFMGVPHFQIEDEEAQYILDEFVLDNTSKMLKTHTDSLKQGDCYIWITREERENPLYPDKKVRLIYNFISPEEVKEIILDPTTKEPIAYILESQNEWTDLGENKRKAKVKQIITAESRFVEVEGDKIEGLEEGETPNVWGFIPIIHFKNEADETLKYGQSDIEPIEPLLKAYHDVMLHALKGSKMHSTPKLKLKLTDVASFLAHNFGVEDPVKFAKEGGKINLDGHEILFLNKDEEAEFVEVKSAIGDAKELLKLLFYCIVDVSETPEFIFGVHTPSALASVKEQMPIMVNKIRRKREQFTNSWQLLARMVLIMSSNSSGMKYSSYDVTIGWDEVNPRDDKELAETLEKVCCALDKALEGGFISEESTVNFLAQYIDTMSNYISDDPEREGEREKIIKTKMLKYRLDDSQGLNDESNEIEKEINKIKDNNGNG
gp45 - Portal protein U 500 Clostridioides Difficile MGIISYVKKLFKRPAGEIMRMSSGNIGVYKLDDSRVDYELARELYQNKNANYKLGSSFVRPIVNSTTGFMGVPHFQIEDEEAQYILDEFVLDNTSKMLKTHTDSLKQGDCYIWITREERENPLYPDKKVRLIYNFISPEEVKEIILDPTTKEPIAYILESQNEWTDLGENKRKAKVKQIITAESRFVEVEGDKIEGLEEGETPNVWGFIPIIHFKNEADETLKYGQSDIEPIEPLLKAYHDVMLHALKGSKMHSTPKLKLKLTDVASFLAHNFGVEDPVKFAKEGGKINLDGHEILFLNKDEEAEFVEVKSAIGDAKELLKLLFYCIVDVSETPEFIFGVHTPSALASVKEQMPIMVNKIRRKREQFTNSWQLLARMVLIMSSNSSGMKYSSYDVTIGWDEVNPRDDKELAETLEKVCCALDKALEGGFISEESTVNFLAQYIDTMSNYISDDPEREGEREKIIKTKMLKYRLDDSQGLNDESNEIEKEINKIKDNNGNG
gp45 - Portal protein V 500 Clostridioides Difficile MGIISYVKKLFKRPAGEIMRMSSGNIGVYKLDDSRVDYELARELYQNKNANYKLGSSFVRPIVNSTTGFMGVPHFQIEDEEAQYILDEFVLDNTSKMLKTHTDSLKQGDCYIWITREERENPLYPDKKVRLIYNFISPEEVKEIILDPTTKEPIAYILESQNEWTDLGENKRKAKVKQIITAESRFVEVEGDKIEGLEEGETPNVWGFIPIIHFKNEADETLKYGQSDIEPIEPLLKAYHDVMLHALKGSKMHSTPKLKLKLTDVASFLAHNFGVEDPVKFAKEGGKINLDGHEILFLNKDEEAEFVEVKSAIGDAKELLKLLFYCIVDVSETPEFIFGVHTPSALASVKEQMPIMVNKIRRKREQFTNSWQLLARMVLIMSSNSSGMKYSSYDVTIGWDEVNPRDDKELAETLEKVCCALDKALEGGFISEESTVNFLAQYIDTMSNYISDDPEREGEREKIIKTKMLKYRLDDSQGLNDESNEIEKEINKIKDNNGNG
gp50 - Portal adaptor protein W 112 Clostridioides Difficile MTPARDLIEKLRLLLNDKDKKSFTDEELNLFLEEADCIYCAASQGWILKSLQYENTVGEMYEYKVGQETYKSSSIKDLVSVAYQNADKFKDMCTNKKEKGSFMLGISTEFEI
gp50 - Portal adaptor protein Y 112 Clostridioides Difficile MTPARDLIEKLRLLLNDKDKKSFTDEELNLFLEEADCIYCAASQGWILKSLQYENTVGEMYEYKVGQETYKSSSIKDLVSVAYQNADKFKDMCTNKKEKGSFMLGISTEFEI
gp50 - Portal adaptor protein Z 112 Clostridioides Difficile MTPARDLIEKLRLLLNDKDKKSFTDEELNLFLEEADCIYCAASQGWILKSLQYENTVGEMYEYKVGQETYKSSSIKDLVSVAYQNADKFKDMCTNKKEKGSFMLGISTEFEI
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-07-29
Deposition Author(s): Bullough, P.A. , Fagan, R.P. , Wilson, J.S.