9GAE
Respiratory supercomplex ci1-ciii2-civ2 from alphaproteobacterium
PDB DOI: 10.2210/pdb9gae/pdb
Classification: ELECTRON TRANSPORT Organism(s): Paracoccus Denitrificans Pd1222
Deposited: 2024-07-26 Deposition Author(s): Agip, A.N.A. , Croll, T.I. , Hirst, J. , Spikes, T.E. , Yaikhomba, M.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.0 Å
Respiratory supercomplex ci1-ciii2-civ2 from alphaproteobacterium
Agip, A.N.A. , Croll, T.I. , Hirst, J. , Spikes, T.E. , Yaikhomba, M.
Primary Citation of Related Structures: 9GAE
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Cytochrome b | A | 440 | Paracoccus Denitrificans Pd1222 | MAGIPHDHYEPKTGFERWLHRRLPIVSLVYDTLMIPTPKNLNWWWIWGIVLAFCLVLQIATGIVLVMHYTPHVDLAFASVEHIMRDVNGGYMLRYLHANGASLFFLAVYIHIFRGLYYGSYKAPREVTWIVGMLIYLMMMGTAFMGYVLPWGQMSFWGATVITGLFGAIPGVGEAIQTWLLGGPAVDNPTLNRFFSLHYLLPFVIAALVVVHIWAFHTTGNNNPTGVEVRRGSKEEAKKDTLPFWPYFVIKDLFALAVVLVVFFAIVGFMPNYLGHPDNYIEANPLVTPAHIVPEWYFLPFYAILRAFTADVWVVMLVNWLSFGIIDAKFFGVIAMFGAILVMALVPWLDTSRVRSGQYRPLFKWWFWLLAVDFVVLMWVGAMPAEGIYPYIALAGSAYWFAYFLIILPLLGIIEKPDAMPQTIEEDFNAHYGPETHPAE |
| Aa3 type cytochrome c oxidase subunit IV | J | 66 | Paracoccus Denitrificans Pd1222 | MGYPCARRIASFTDRIMASHHEITDHKHGEMDIRHQQATFAGFIKGATWVSILSIAVLVFLALANS |
| Cytochrome c oxidase subunit 1 | K | 558 | Paracoccus Denitrificans Pd1222 | MADAAVHGHGDHHDTRGFFTRWFMSTNHKDIGILYLFTAGIVGLISVCFTVYMRMELQHPGVQYMCLEGARLIADASAECTPNGHLWNVMITYHGVLMMFFVVIPALFGGFGNYFMPLHIGAPDMAFPRLNNLSYWMYVCGVALGVASLLAPGGNDQMGSGVGWVLYPPLSTTEAGYSMDLAIFAVHVSGASSILGAINIITTFLNMRAPGMTLFKVPLFAWSVFITAWLILLSLPVLAGAITMLLMDRNFGTQFFDPAGGGDPVLYQHILWFFGHPEVYIIILPGFGIISHVISTFAKKPIFGYLPMVLAMAAIGILGFVVWAHHMYTAGMSLTQQAYFMLATMTIAVPTGIKVFSWIATMWGGSIEFKTPMLWAFGFLFLFTVGGVTGVVLSQAPLDRVYHDTYYVVAHFHYVMSLGAVFGIFAGVYYWIGKMSGRQYPEWAGQLHFWMMFIGSNLIFFPQHFLGRQGMPRRYIDYPVEFAYWNNISSIGAYISFASFLFFIGIVFYTLFAGKRVNVPNYWNEHADTLEWTLPSPPPEHTFETLPKREDWDRAHAH |
| Cytochrome c oxidase subunit 2 | L | 298 | Paracoccus Denitrificans Pd1222 | MMAIATKRRGVAAVMSLGVATMTAVPALAQDVLGDLPVIGKPVNGGMNFQPASSPLAHDQQWLDHFVLYIITAVTIFVCLLLLICIVRFNRRANPVPARFTHNTPIEVIWTLVPVLILVAIGAFSLPILFRSQEMPNDPDLVIKAIGHQWYWSYEYPNDGVAFDALMLEKEALADAGYSEDEYLLATDNPVVVPVGKKVLVQVTATDVIHAWTIPAFAVKQDAVPGRIAQLWFSVDQEGVYFGQCSELCGINHAYMPIVVKAVSQEKYEAWLAGAKEEFAADASDYLPASPVKLASAE |
| cytochrome-c oxidase | M | 274 | Paracoccus Denitrificans Pd1222 | MAHVKNHDYQILPPSIWPFFGAIGAFVMLTGAVAWMKGITFFGLPVEGPWMFLIGLVGVLYVMFGWWADVVNEGETGEHTPVVRIGLQYGFILFIMSEVMFFVAWFWAFIKNALYPMGPDSPIKDGVWPPEGIVTFDPWHLPLINTLILLLSGVAVTWAHHAFVHEGDRKTTINGLIVAVILGVCFTGLQAYEYSHAAFGLADTVYAGAFYMATGFHGAHVIIGTIFLFVCLIRLLKGQMTQKQHVGFEAAAWYWHFVDVVWLFLFVVIYIWGR |
| Aa3 type cytochrome c oxidase subunit IV | N | 66 | Paracoccus Denitrificans Pd1222 | MGYPCARRIASFTDRIMASHHEITDHKHGEMDIRHQQATFAGFIKGATWVSILSIAVLVFLALANS |
| Cytochrome c, class I | P | 176 | Paracoccus Denitrificans Pd1222 | MFDTMTVTKAAGALIGSLLFLLLMSWAASGIFHVGTSGHGAEGEEHAQAYTIPVESAGGAEGEAVDEGPDFATVLASADPAAGEKVFGKCKACHKLDGNDGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQEFLTNPKAVVKGTKMAFAGLPKIEDRANLIAYLEGQQ |
| NADH:ubiquinone oxidoreductase 17.2 kD subunit | Q | 124 | Paracoccus Denitrificans Pd1222 | MSFLLRFLTWWNSQTLNTQVWTKLYGEKVGEDDQGNVYYQSGGGKRRWVIYNGESEASRISPEWHGWLHHTYKEPPTAAPLAHKPWEKPHEPNLTGSSGAYHPAGSLYRAQPVERRDYDAWQPE |
| Zinc finger CHCC-type domain-containing protein | R | 62 | Paracoccus Denitrificans Pd1222 | MTIPAPEIQTVTSWKVACDGDEARGLGHPRVWLAIPRDTGWVECGYCDKRFVIDREHAHDDH |
| Protein-L-isoaspartate O-methyltransferase | Z | 217 | Paracoccus Denitrificans Pd1222 | MTDFAQRRTMMVDTQVRPNEVTSYPVIEAMLNVPREQFVPESRRDVAYVGNNIDLAPGRVLLEPRTLGKMMDILNLQNGDLVLDVGCGYGYSAAVMARIAEAVVAVEEDAAMAAEAEGRLAAQDVFNVAVVQGALAEGCPGQAPYDAILIEGAVEQVPEALTEQLREGGRIVALFREGNLGIVRLGHKLDGRVNWRFAFNAVAPLLPGFARPRGFVL |
| NADH-quinone oxidoreductase subunit D | D | 412 | Paracoccus Denitrificans Pd1222 | MDGDIRKNSYDDGSMDALTGEQSIRNFNINFGPQHPAAHGVLRMVLELDGEIVERADPHIGLLHRGTEKLMESRTYLQNLPYLDRLDYVAPMNQEHAWCLAIERLTGTVIPRRASLIRVLYSEIGRILNHLMGVTTGAMDVGALTPPLWGFEAREELMIFYERACGARLHAAYFRPGGVHQDLPPDLLDDIEEWCERFPKLVDDLDTLLTENRIFKQRLVDIGIVTEADALDWGYTGVMVRGSGLAWDLRRSQPYECYDEFDFQIPVGRNGDCYDRYLCRMAEMRESCKIMQQAVQKLRAEPAGDVLARGKLTPPRRAEMKRDMESLIHHFKLYTEGFKVPAGEVYAAVEAPKGEFGVYLVADGTNKPWRAKLRAPGFAHLQSIDWMSRGHMLADVPAIIATLDIVFGEVDR |
| Cytochrome c1 | B | 450 | Paracoccus Denitrificans Pd1222 | MTLRNASLTAVAALTVALAGGAVAQDASTAPGTTAPAGSSYHTNEAAPAAADTAPAAEAADEPAAEEAEAGEAEVTEEPAATETPAEEPAADEPAATEEPDAEAEPAAEEAQATTEEAPAEEPAAEEPAAEEPAEEPAADAPAEEAAAEEAPAEPEAAAEEPAAEEPEATEEEAPAEEAAAEEAPAEEVVEDEAAADHGDAAAQEAGDSHAAAHIEDISFSFEGPFGKFDQHQLQRGLQVYTEVCSACHGLRYVPLRTLADEGGPQLPEDQVRAYAANFDITDPETEEDRPRVPTDHFPTVSGEGMGPDLSLMAKARAGFHGPYGTGLSQLFNGIGGPEYIHAVLTGYDGEEKEEAGAVLYHNAAFAGNWIQMAAPLSDDQVTYEDGTPATVDQMATDVAAFLMWTAEPKMMDRKQVGFVSVIFLIVLAALLYLTNKKLWQPIKHPRKPE |
| NADH dehydrogenase subunit E | E | 239 | Paracoccus Denitrificans Pd1222 | MLRRLSPIQPDSFEFTPANLEWARAQMTKYPEGRQQSAIIPVLWRAQEQEGWLSRPAIEYCADLLGMPYIRALEVATFYFMFQLQPVGSVAHIQICGTTTCMICGAEDLIRVCKEKIAPEPHALSADGRFSWEEVECLGACTNAPMAQIGKDFYEDLTVEKLAALIDRFAAGEVPVPGPQNGRFSAEALGGPTALADLKGGEAHNASVARALRLGDSIKRIDGTEVPITTPWLATQNGV |
| NADH-quinone oxidoreductase subunit C | C | 208 | Paracoccus Denitrificans Pd1222 | MSEALSDEALLELAEHIALRRENDVISTQVAFGELTVNATLSGVIGLIEFLRNDPNCRFSTLIDITAVDNPARPARFDVVYHLLSMYQNQRIRVKVQVREDELVPSLIGVFPGANWYEREVFDLFGILFSGHSDLRRILTDYGFRGHPLRKDFPTTGYVEVRWSDIEKRVVYEPVNLVQEYRQFDFLSPWEGAKYVLPGDEKAPEAKK |
| NADH-quinone oxidoreductase subunit F | F | 431 | Paracoccus Denitrificans Pd1222 | MLNDQDRIFTNLYGMGDRSLAGAKKRGHWDGTAAIIQRGRDKIIDEMKASGLRGRGGAGFPTGMKWSFMPKESDGRPSYLVINADESEPATCKDREIMRHDPHTLIEGALIASFAMGAHAAYIYIRGEFIREREALQAAIDECYDAGLLGRNAAGSGWDFDLYLHHGAGAYICGEETALLESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAEWFASFGRPNNAGVKLFGLTGHVNTPCVVEEAMSIPMRELIEKHGGGIRGGWKNLKAVIPGGASCPVLTAEQCENAIMDYDGMRELRSSFGTACMIVMDQSTDVVKAIWRLSKFFKHESCGQCTPCREGTGWMMRVMERLVRGDAEVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRIKAKRTGRMGAMAAE |
| NADH-quinone oxidoreductase | G | 674 | Paracoccus Denitrificans Pd1222 | MADLRKIKIDDTIIEVDPNMTLIQACEMAGIEVPRFCYHERLSIAGNCRMCLVEVVGGPPKPAASCAMQVKDLRPGPEGAPSEIRTNSPMVKKAREGVMEFLLINHPLDCPICDQGGECDLQDQAMAYGVDFSRYREPKRATEDLNLGPLVETHMTRCISCTRCVRFTTEVAGITQMGQTGRGEDSEITSYLNQTLESNMQGNIIDLCPVGALVSKPYAFTARPWELTKTESIDVMDALGSSIRIDTKGREVMRILPRNHDGVNEEWISDKTRFVWDGLRRQRLDRPYIRENGRLRPASWPEALEAAARAMKGKKIAGLIGDLVPAEAAFSLKQLVEGLGGKVECRVDGARLPAGNRSAYVGTARIEDIDDAEMIQLIGTNPRDEAPVLNARIRKAWSKGAKVGLVGEPVDLTYDYAHVGTDRAALESLSSREISDETKARPSIVIVGQGAIREADGEAVLAHAMKLAENSNSGLLILHTAAGRVGAMDVGAVTEGGLLAAIDGAEVVYNLGADEVDIDQGPFVIYQGSHGDRGAHRADIILPGACYTEESGLFVNTEGRPQLAMRANFAPGEGKENWAILRALSAELGATQPWDSLAGLRRKLVEAVPHLAQIDQVPQNEWQPLGRFDLGQASFRYAIRDFYLTNPIARSSPLMGELSAMAAARKAPAPLAAE |
| NADH-quinone oxidoreductase subunit H | H | 345 | Paracoccus Denitrificans Pd1222 | MAEFWASPYGFALSMLLQGLAVIAFVMGSLIFMVYGDRKIWAAVQMRRGPNVVGPWGLLQTFADALKYIVKEIVIPAGADKFVYFLAPFLSMMLALFAFVVIPFDEGWVMANINVGILFIFAASSLEVYGVIMGGWASNSKYPFLASLRSAAQMISYEVSLGLIIIGIIISTGSMNLTAIVEAQRGDYGLLNWYWLPHLPMVVLFFVSALAECNRPPFDLVEAESELVAGFMTEYSSTPYLLFMAGEYIAMYLMCALLSLLFFGGWLSPVPFIADGWWWMVIKMWFWFYMFAMVKAIVPRYRYDQLMRIGWKVFLPLSLGWVVLVAILARYEILGGFWARFAVGG |
| NADH-quinone oxidoreductase subunit I | I | 163 | Paracoccus Denitrificans Pd1222 | MAFDFARATKYFLMWDFIKGFGLGMRYFVSPKPTLNYPHEKGPLSPRFRGEHALRRYPNGEERCIACKLCEAVCPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYATETREELFYDKQKLLANGERWEAEIARNLQLDAPYR |
| Cytochrome c, class I | O | 176 | Paracoccus Denitrificans Pd1222 | MFDTMTVTKAAGALIGSLLFLLLMSWAASGIFHVGTSGHGAEGEEHAQAYTIPVESAGGAEGEAVDEGPDFATVLASADPAAGEKVFGKCKACHKLDGNDGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQEFLTNPKAVVKGTKMAFAGLPKIEDRANLIAYLEGQQ |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2024-07-26 Deposition Author(s): Agip, A.N.A. , Croll, T.I. , Hirst, J. , Spikes, T.E. , Yaikhomba, M.