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FASTA Sequence PDB Format mmCIF Format
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9G9D

Cryoem structure of enterococcus italicus csm-crrna-ctr (4.3) complex

PDB DOI: 10.2210/pdb9g9d/pdb

Classification: RNA BINDING PROTEIN
Organism(s): Hydrogenobacter Thermophilus (Strain Dsm 6534 / Iam 12695 / Tk-6) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2024-07-25
Deposition Author(s): Jinek, M. , Jungfer, K.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.9 Å

9g9d
Literature

Cryoem structure of enterococcus italicus csm-crrna-ctr (4.3) complex

Jinek, M. , Jungfer, K.

Primary Citation of Related Structures: 9G9D


Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR system Cms protein Csm2 C 140 Hydrogenobacter Thermophilus (Strain Dsm 6534 / Iam 12695 / Tk-6) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MELAKTKTGEMIDLNFARKVVEENKRVKDNRGRQEIVLFNGLTTSKLRNLLELINHVYTKVYNSDDTTLSEDVRDELEYLKVKFAYESGREPAVRTFIEKTYVDKLVDVVLKKNTKKIFLDYCKYFEALVAYAKFYRMGD
CRISPR system Cms protein Csm2 B 140 Hydrogenobacter Thermophilus (Strain Dsm 6534 / Iam 12695 / Tk-6) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MELAKTKTGEMIDLNFARKVVEENKRVKDNRGRQEIVLFNGLTTSKLRNLLELINHVYTKVYNSDDTTLSEDVRDELEYLKVKFAYESGREPAVRTFIEKTYVDKLVDVVLKKNTKKIFLDYCKYFEALVAYAKFYRMGD
CRISPR system Cms protein Csm2 J 140 Hydrogenobacter Thermophilus (Strain Dsm 6534 / Iam 12695 / Tk-6) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MELAKTKTGEMIDLNFARKVVEENKRVKDNRGRQEIVLFNGLTTSKLRNLLELINHVYTKVYNSDDTTLSEDVRDELEYLKVKFAYESGREPAVRTFIEKTYVDKLVDVVLKKNTKKIFLDYCKYFEALVAYAKFYRMGD
CRISPR system Cms endoribonuclease Csm3 F 214 Hydrogenobacter Thermophilus (Strain Dsm 6534 / Iam 12695 / Tk-6) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MYSKIRIVGKIDVLTGLHIGGGGETSMIGAIASPVVRDPYSRLPIIPGSSIKGKMRSLLAKHIGLIPGQKMHNQDAPEILRLFGSSQKGAIQSSRLQISDAFFSKASQEEFDKKDLAYTETKFENTISRLTAVANPRQIERVTRGASFDFHIIYNVENINEVMADFENIKTAIHLLENDYLGGGGTRGNGRIRFVIDSIDTVVGDFDSSNLSIK
CRISPR system Cms endoribonuclease Csm3 E 214 Hydrogenobacter Thermophilus (Strain Dsm 6534 / Iam 12695 / Tk-6) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MYSKIRIVGKIDVLTGLHIGGGGETSMIGAIASPVVRDPYSRLPIIPGSSIKGKMRSLLAKHIGLIPGQKMHNQDAPEILRLFGSSQKGAIQSSRLQISDAFFSKASQEEFDKKDLAYTETKFENTISRLTAVANPRQIERVTRGASFDFHIIYNVENINEVMADFENIKTAIHLLENDYLGGGGTRGNGRIRFVIDSIDTVVGDFDSSNLSIK
CRISPR system Cms endoribonuclease Csm3 D 214 Hydrogenobacter Thermophilus (Strain Dsm 6534 / Iam 12695 / Tk-6) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MYSKIRIVGKIDVLTGLHIGGGGETSMIGAIASPVVRDPYSRLPIIPGSSIKGKMRSLLAKHIGLIPGQKMHNQDAPEILRLFGSSQKGAIQSSRLQISDAFFSKASQEEFDKKDLAYTETKFENTISRLTAVANPRQIERVTRGASFDFHIIYNVENINEVMADFENIKTAIHLLENDYLGGGGTRGNGRIRFVIDSIDTVVGDFDSSNLSIK
CRISPR system Cms endoribonuclease Csm3 I 214 Hydrogenobacter Thermophilus (Strain Dsm 6534 / Iam 12695 / Tk-6) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MYSKIRIVGKIDVLTGLHIGGGGETSMIGAIASPVVRDPYSRLPIIPGSSIKGKMRSLLAKHIGLIPGQKMHNQDAPEILRLFGSSQKGAIQSSRLQISDAFFSKASQEEFDKKDLAYTETKFENTISRLTAVANPRQIERVTRGASFDFHIIYNVENINEVMADFENIKTAIHLLENDYLGGGGTRGNGRIRFVIDSIDTVVGDFDSSNLSIK
CRISPR system Cms protein Csm4 G 307 Hydrogenobacter Thermophilus (Strain Dsm 6534 / Iam 12695 / Tk-6) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MNQLVVKLVKLTFKSPVHFGMKRLSDSNHTIAADTLFSALIIEALQQQLELSHLLNNLVITDLFPYNKTSYFLPKPLIRIEGKKGDESGYKAFKKLTYIPVENYSEYLRGEIDSLEASKIAESLNLGKASLSTKVSLQAVDHNGESEPYSVGNFTFYPESGLYFLAKGNADTIGQLEILMHALQYSGIGGKRSAGYGQFRCTIEDSGKFDSLLSQTGNIAILLSSAMASDEELVDCLEDARYLLKKRTGFVQSKTYADQLVKKKDFYAFSAGSTFYQKFNGKIFDVSDNGRHSVYRYAKAFWLEGKI
CRISPR system Cms protein Csm5 H 379 Hydrogenobacter Thermophilus (Strain Dsm 6534 / Iam 12695 / Tk-6) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MIEKVYQVKLKVYGPVHIGSGKIIRKQEYIYDRRKSLAHIVDGPNLVKFLNKKGKFTAYLQYLNTTKERADLYTFLRQEQIDTNDWKTFVLYTERVNQGKIDMKDHNPYSRTSTNRRQVDKGMNDLHLFVRDGRGDLYIPGSSLKGALRTVLEGANQSAEAFHSLSISDSLPIDPKNLAIYQKIDINKELKPMPLYRECVNVGTTVEFTMKINSDDWTIEKIEKQIQQAYLQYWNKWFVGMVTTPGGKAFIKGGGLPSVLHAKHRPTVLFLGGGTGFPSKTTHYLQKPKEQAQKDIFAILQRRFRNVYGKMATVPKNVPMVLKGTVNDSTNKWYQQGVCLLEFQPIGEALEVLFQGPGGGWSHPQFEKGGGWSHPQFEK
CRISPR system single-strand-specific deoxyribonuclease Cas10/Csm1 (subtype III-A) A 774 Hydrogenobacter Thermophilus (Strain Dsm 6534 / Iam 12695 / Tk-6) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MHHHHHHHHHHLEVLFQGPSNKKLELMYGSLLHDIGKIVYRSNSVDFAKGTHSKIGSQFLNKFKPFQLSGIVDSVSYHHYKELASSSLLDDSVAYITYIADNIASGTDRRASEGDYEGEGNRQRFDKRAPLASIFNVVNSETKGLANYTYSFEKEQVYRYPTDAKKEYTSSQYAALVNKMTDDLSNKLKVGPDSFSSLLQWTESLWSYIPSSTDTNQVMDVSLYDHSKITCAIASCIYDYLTEMNCVNYRKELFSPYEKTKQFYQEDVFLLVSLDMSGIQDFIYNISGSKALKSLRSRSFYLETMLESLVDDLLSDLELSRANLLYTGGGHAYLLLPNTERARDVLASFEGEMKEWFIKIFKTDLSVAIAYKACTGEDLMNSNGTYSDLWQTVSRKLSDKKAHKYSLNEIKLFNSTIHAGTQECKECLRSDIDISEDSLCKICEGIIAISNDLRDYSFFVVSPEGKVPLPRNRYLSVENQDGAERKIKMNKETRIYSKNQPFVGKQLVTNLWMCDYDFSTLNPETKKQGIASYVNREVGIPRLGVLRADIDNLGTTFIKGIPEQYRSISRTATLSRQLSMFFKFELSNILKGARISVIYSGGDDLFLIGAWDDVISKALVLRKAFTRFSAGKLTFSAGIGMYPVKYPISKMASETGVLEDLAKRGEKNQVALWNDSKVFGWSQLEEQILKEKMIPLQEALTNSQEHGKSFLYKMLELLRNEDQINIARLAYLLARSSLSEELTQSIFAWSQNKQQKVELITAIEYLVYQIREAD

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (35-MER) r 45 NA ACGAGAACAUGCGCGACAUUCCGAAGAACGCUGAAGCGCUGGGGG
RNA (35-MER) t 47 NA CCCCCAGCGCUUCAGCGUUCUUCGGAAUGUCGCGCAUUGGCAUGGAA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-07-25
Deposition Author(s): Jinek, M. , Jungfer, K.