9G6K
Lsu structure derived from the lsu sample of the mitoribosome from t. gondii.
PDB DOI: 10.2210/pdb9g6k/pdb
Classification: RIBOSOME Organism(s): Toxoplasma Gondii
Deposited: 2024-07-18 Deposition Author(s): Barua, S. , Boissier, F. , Hashem, Y. , Nguyen, T.T. , Rocha, R.E.O.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.89 Å
Lsu structure derived from the lsu sample of the mitoribosome from t. gondii.
Barua, S. , Boissier, F. , Hashem, Y. , Nguyen, T.T. , Rocha, R.E.O.
Primary Citation of Related Structures: 9G6K
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| RNA23t | l0 | 44 | NA | AACAGGUGCCAGGCCAACAAGAAUCCGAUCCGUGUAUUCCGUAC |
| RNA3 | l9 | 91 | NA | UCCUAUUUCCUAGUACCAUUAGUGAACUCAUUUGGUCUGAUCCUAAGUACGCAGUGAGCUAAAUAGAUACAAGGAACUUGACAAGCAUUAC |
| RNA2 | la | 65 | NA | GGACUCCUUAACUUAAACUGAGGAGUCAAGUAGGUACAAACCGUACAAGGAUUAAUUAUGUCCAA |
| RNA38 | lb | 45 | NA | UGUGUGAGAAGGAGCUAUACAGAUACAGGCGAAGGAGAAGCGGGA |
| RNA35 | lc | 27 | NA | UGUAACGGUACAAGCUGUAAACAAAGG |
| RNA32 | ld | 16 | NA | AUUAACAUAACAACAU |
| RNA15 | le | 29 | NA | CGGCGAGAAGGGAAGUGUGUUUCAAAGAA |
| RNA10 | lf | 88 | NA | GAGUCUAGCUUCAGUUGUUAUCUGAUUGGUAUUGCAUGCCCUGAGUACGUAAGGAAAAGGAAAGGUUAACCGCUAUUUAAACAAAAAA |
| LSUC | lg | 26 | NA | CUAAAGAUAGCGUGAAAGCUCAAAAA |
| RNA16 | lh | 27 | NA | UUCUUGGCAUAACGUUGUGUAGUUAAA |
| RNA13 | li | 48 | NA | AAGGGAUGUUUAGCCGGGAAGUUAGCGUCUAACAAAAAAAAAAAAAAA |
| RNA29 | l1 | 50 | NA | UUCGUUGACUGUGUUUACCACGGGGAAUUAGAACAGAAUAUCAAAAAAAA |
| LSUD/E | lj | 279 | NA | AGGAGAGCGUCUGUUGUACAUCAACACUAGAUACCGCUAAUACCACUGUAGAGGUAUAGUAUAUAAUCCCUGCCCGGUGCAGUAACAUGUAAACGGCGGCUGUUGACGGUCCAAAGGUAGGAAAAUCCUUGUCGGGUAAUUAUCGUCGUGCGUGAAAGUUGGUCCGACUCUUCACAUGUCGUUUAUCUAAAACUUUUUGAAAUAGAAUUAUCUUUGAAUAUGAGGAUCGAGAUGGCCCGACGGUUAGACCCUGAGCACCUUUACAUCCCUUAAAUCAAA |
| SSUF | lk | 38 | NA | ACACAGUCGGUACGAAGUCGAAACAAGGUAGUUGAUGG |
| RNA7 | ll | 91 | NA | UGGGAGCGAAGAUAAUCUAAUAUGUAACUCCGUUCAUGGAAAUCAAAAGAGCUUUCACUGAUUGUAUUUAUGAAACGUGAAAAAAAAAAAA |
| LSUF/G | lm | 194 | NA | AUAUAACGGUCGUAAGGUACGCCGGGGAUAACAGGUCAGAUAAUAUUGGGAGUUCUAAUCCUCGGAUUGUAUCAGCACCUCCAUGUCGGCUCAUUACUCCCUUGUUAUUGAACAAGAUUCAGUUAGGAACGAUAGUUCACCGUCAGAUGUAAUACGUGAGCUGGGUGUCUGGAGACAGUUUGUUCCCUAUCUAC |
| RNA37 | ln | 62 | NA | ACCGGUGGUUUGUUAGUAUUUAUGUCAUCAACAUGUCAAUGAAAUAUCAAUAACGAUGAAAA |
| LSUA | lo | 180 | NA | GUUAGUAUGAUCUCAAAGUACCAGAAGCCAUGUGAUCUAUAUAGUAUAACGGGACAUUAGACCGAACCUGCGAUAGAUAAAUAUAUCUUGGAUGAUUGUAUAUUAGCGGCUAAAUGUCAAUCAAACAUGCGAAUUUUAGGUUUUCCAUGAAAUCUAUUUGGAAGAAGAGGCUUGAAAAAA |
| ulr1 | lp | 29 | NA | UUUUUUUUUUUUUUUUUUUUUUUUUUUUU |
| ulr2 | lq | 37 | NA | UUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUU |
| ulr3 | lr | 28 | NA | UUUUUUUUUUUUUUUUUUUUUUUUUUUU |
| LSUB | l2 | 31 | NA | AUGUUUGCUUGGAAGCUGUAGUCAUUAAAAA |
| RNA6 | l3 | 59 | NA | UGAUAUAAUUAUCGUACAAGCACUCAGCUAGUUAUUGAGAGACACUCACGAGCCCAAAA |
| RNA1 | l4 | 94 | NA | CCUUUUAAUUGAUUAUGCUGACUUUAGUCCCGAUAAACUACAGUUCUGCUUAAACUGAGGAGUCAAGUAGGUACAAACCGUACAAGGAUUAAUU |
| RNA31 | l5 | 36 | NA | AUCAUUGUGUUAUGGUUCUAUCGCAAACCAUUGAGA |
| RNA14 | l6 | 50 | NA | ACAGGAUCAAAUCUUCCUUGAGCGACUCGACAGGCAAAAAAAAAAAAAAA |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Ribosomal protein L15, putative | LS | 311 | Toxoplasma Gondii | NAERGDADGGTSALRVTREQFHDGSRGLFRPHPFNRRFARVRKPVFPIEARNLRLMYKRKSKRRRGRGDKSNAKGIRWKHVHQQAGRYKGPRSRTFEGGKLPLYRRIPKWPDAWLARQRKVLEPLNLAKLRTFIESGRLDTRFTITQRHLNDSRCVKVKNGVSLFNVNDYPFPYKISIEVAGADQSSIDAIRRVGGEVIIVYRNRLNLRAHIKPYKFEVLPKTARPNLEMVHYLEKMRARGCVVKYVKPQWLIDEEKSLKTELAEFEAEALIAKGEAIERGDPDLRESVDDLQQRLLKRFRLRETRAAELL |
| mL40 | LT | 240 | Toxoplasma Gondii | PKHLTRYLPFVPTSLVHETTSFLHDATKLRALLALIFSPCKPEASVADELASPAARLEFQQEKERYHAIRDQHTDCYRRHESAAAASMWRAIEALPSDLYEEAVQSVTFAPPYENEPPPPDPSELRPGKNASTETQAASAGQQPSAASRGSSVRTLAGPGAAGEAVSQPEHGFYHERFAFPRALMFHEMYGEQIFQSLSQLERRKLQVFMNLMHVRYPHAELKRDKPALFWLPERQVLSR |
| Putative 50S ribosomal protein L16 | LW | 179 | Toxoplasma Gondii | PPFRFKAPQEVRIKVPIGRIPPAVGPEIRLGKSIVAVAPHRVTAEQLEDARRVLRRVLGRSKEVHQNVHATYAVTRKPEGTKMGQGKGSIDRFVARVPAGRILFHIPQINPFHPFPEVEPNFAAFKAIAPRLPVPVVFREQNNFFQMHSVKDLIRKRQAEERENREKTARDKLGGFHTD |
| mL164 | LU | 232 | Toxoplasma Gondii | DRFRSAVHREMIVAMTRTHLQNLLLKRFGTFKTQECRILASPAFSAVVLKAWASAVVDANLRLDGEGAMRLAYASPPPAVLSDPKVKELVASDPEAAWMLKKLSCQSVASFASLPREEEALEEVVRVKQKDNVPQPHFPSVLKMDHPQFPYEPHELEKMRDLYGVLLKWPYREQGQVASVAARRASLESKREERLRKGETEVAGQLKVTTGCSDSYVYAPSEMETGLYREHA |
| mL180 | LV | 112 | Toxoplasma Gondii | MRNAIFPRIDFLRYLKKIHVSYCPTRPKTEIAKQLIMRVTSESVKKKFPHLQASWEMLAYDAPATVEVELLDGRRVRRIIDGYSKAEKKKIVDDWRFTANMEPWPEVLGPQP |
| Large ribosomal subunit protein bL21m | LY | 404 | Toxoplasma Gondii | LQIYPQRRVIGHRIEIFRGKHRRRRMVPPRIPLHPLAANTSEETASKDMNLFETYRDLQLRWKKTCRQRKKKFNIARKWRMPRNIRPLPDPSWTLVFHVNPRSGYRRGRGVCRDRRRENLQGDALEVSAEDEENRLAGKAPSNRDQEDRQRGRGAQETYFRSGAALDAAIEEENILQILARHPEKGRVEGSGRPRGADGWGRDGPLPQWMQILQRTPQEELFCVMKSNVSTQHKVTAGDLIQAEKLHRKQAGDKVVFGTVMLVGSRDWTIIGKPTVPFAKVEATVEEQTLAGETLSFFYRKSRRVSRFRRIRHCVTMLRIDRIVVDPNMTVDPPAPKPDRLLDLWANRWLYPDELDGIKRNESGEPVVSEIYDGREHQKGSYQRRGLTASYRWYPDPQSAHWRP |
| mL173 | LX | 98 | Toxoplasma Gondii | TVKSLAAAEQWEPSPLTLKQHQQVVVWKKDRTCILCKKEVQGGNVEKVETACEKAWRFLSGYSRSAHVCPILPQMRILRYGELPLRDRAKFDAKLRRE |
| mL182 | LZ | 120 | Toxoplasma Gondii | TEPISHMQEKPATLRLRGLPYRTTAEDIANFFEGYSLAGPPDEAIQLHRRMDGRPTGWASVYFESEQEARRAKQDKHRSYLHGRYIEIFINFETGELEWIHQPQLSENVNRKHHGKDNRG |
| mL178 | UA | 85 | Toxoplasma Gondii | GHKHSESVLQQFYNRLPVRKRFLKAIRKGTLIWDKGQVKIPPIAMQGYGLPNKLVLPHQKEFNNKLPKFKGKINQLKATRIWFQD |
| bL27m | UB | 174 | Toxoplasma Gondii | ASYRRPSRASPTGQARKPHVGVRRLAAEYVWPGVVLVKQRKVIAFNVETKRRNRHFKLYPGENVKVSKVTNLVALCHGRVKFTHDVSRDVLVVNVLPERREELLREDLWRYRTEHVRSMEENRHICFLRRKAVRMFGKELVNPPTKPPLRPFYFTKYDSWENPALPDVPQLDDD |
| mL179 | UC | 105 | Toxoplasma Gondii | AHKFAAPPCPNLLLLRKTIHQRLQPILFFLKNDVTMGNYVYDQHFKGVLCSPLFEGKSYKEIYAMVDRVLEDIGLSGRVKLYCEPPSLLHKMKYHVRKHWPLEKG |
| Transmembrane protein | UD | 35 | Toxoplasma Gondii | IRPRKKGMRLDRRRSKKQYKHGRHVGGWNYRWLGS |
| mL53 | UE | 113 | Toxoplasma Gondii | PKYDLFKPLDFLACVKSVHVAYHPGRPRSEVCRQLIHHMKSDSVRKRFPSLQASYQLLGYNAPSTIKIELINGKKHEFQAEHFSLREMQMRFDTDQFEAYLEYMKSQSVEAKP |
| bL32m | UF | 78 | Toxoplasma Gondii | AVPKGKRSKHKCKQRQLIYFFDQFDGVFKRRRESFYRSFYNPPYFSKQTEQTSLPPSVLRPFRFPGFWPGRFAFKMAS |
| AP2 domain transcription factor AP2IV-1 | UG | 158 | Toxoplasma Gondii | GTQRVVQKRRHQMRILHPAQTAYVPVEQRPPPIPHSLTASSTVKRLLNNNTVAAKEAAKRINWGAYISHQRGVRWHPQGAWRVQFSRRNHERNFFVRCECYFRVGTYGFQMAKDLAIRYRQRLEKEWEELQEQWTKLDILEAEQRAKYKEKREEHLLL |
| mL181 | UH | 47 | Toxoplasma Gondii | CNPQQTRRKQQYASIIGKQGLSKKQCGIFWDYYKRKCKKRRSTKKFI |
| mL184 | UI | 35 | Toxoplasma Gondii | WNRNPSARYPKKGNKGCRPVCRAMRKIRKRLRTGR |
| uL14m | L7 | 114 | Toxoplasma Gondii | GLWRQSIVRCADNTGVIKACIIGIRNKYGTGKIGARIRVSVRDKTPECTAPKMPKGVIVRRRKETRRKDGSYIKFDENAFVIIQKNKARGTKIKGPVPMEIRHNCKTLARWIFA |
| Putative 50S ribosomal protein L17 | L8 | 246 | Toxoplasma Gondii | GWSKVVNFLNKGVQRRPHRRLPGQPHHQWNMLKTQLDQLVRSDRLELTLPRAHELQQYAEELVHFAKQNTPESSLIVESMIFTPAARRKLFHELCPLYANRPFFYTRVVNQHRLRMRDAAPMAYLEFVDRPGEIRPARPVGFERKQAIWEEMQATRRGRRQWWNHAKKLGLIDEETGDVISDINALRRPSAAEWEESDSEEEKADSPSPYKMVAAPKRALEPFFVDLPPPTERYRKQRYVFKRFRP |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2024-07-18 Deposition Author(s): Barua, S. , Boissier, F. , Hashem, Y. , Nguyen, T.T. , Rocha, R.E.O.