Cryo-em structure of saccharolobus solfataricus 30s initiation complex bound to ss-aif2beta leaderless mrna
PDB DOI: 10.2210/pdb9fy0/pdb
Classification: TRANSLATION Organism(s): Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct
Deposited: 2024-07-02 Deposition Author(s): Bourgeois, G. , Coureux, P.D. , Mechulam, Y. , Schmitt, E.
Cryo-em structure of saccharolobus solfataricus 30s initiation complex bound to ss-aif2beta leaderless mrna
Bourgeois, G. , Coureux, P.D. , Mechulam, Y. , Schmitt, E.
Primary Citation of Related Structures: 9FY0
Nucleic Acids / Hybrid | ||||
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Molecule | Chains | Sequence Length | Organism | Sequence |
rRNA 16S | 2 | 1497 | NA | AAAUCCGGUUGAUCCUGCCGGACCCGACCGCUAUCGGGGUGGGGCUAAGCCAUGGGAGUCGUACGCUCCCGGGCAAGGGAGCGUGGCGGACGGCUGAGUAACACGUGGCUAACCUACCCUGAGGAGGGAGAUAACCCCGGGAAACUGGGGAUAAUCUCCCAUAGGCGAGGAGUCCUGGAACGGUUCCUCGCUGAAAGGCUCAUGGGCUAUUCCCCGCUCAUGAGCGCCUCAGGAUGGGGCUGCGGCCCAUCAGGUAGUUGGGGGGGUAAGGGCCCCCCAAGCCUAUAACGGGUAGGGGCCGUGAGAGCGGGAGCCCCCAGUUGGGCACUGAGACAAGGGCCCAGGCCCUACGGGGCGCACCAGGCGCGAAACGUCCCCAAUGCGCGGAAGCGUGAGGGCGCCACCCCGAGUGCUCCCGUAAGGGAGCUUUUCCCCGCUCUACAAAGGCGGGGGAAUAAGCGGGGGGCAAGUCUGGUGUCAGCCGCCGCGGUAAUACCAGCCCCGCGAGUGGUCGGGACUCUUACUGGGCCUAAAGCGCCCGUAGCCGGCCCGACAAGUCACUCCUUAAAGACCCCGGCUCAACCGGGGGAAUGGGGGUGAUACUGUCGGGCUAGGGGGCGGGAGAGGCCAGCGGUACUCCCGGAGUAGGGGCGAAAUCCUCAGAUCUCGGGAGGACCACCAGUGGCGAAAGCGGCUGGCUAGAACGCGCCCGACGGUGAGGGGCGAAAGCCGGGGCAGCAAAAGGGAUUAGAUACCCCUGUAGUCCCGGCUGUAAACAAUGCAGGCUAGGUGUCACAUGGGCUUAGAGCCCAUGUGGUGCCGCAGGGAAGCCGUUAAGCCUGCNGCCUGGGGAGUACGGUCGCAAGACUGAAACUUAAAGGAAUUGGCGGGGGAGCACCACAAGGGGUGGAACCUGCGGCUCAAUUGGAGXCAACGCCUGGAAUCUUACUAGGGGAGACCGCAGGAUGACGGCCAGGCUAACGACCUUGCCUGACUCGCGGAGAGGAGGUGCAUGGCCGUCGCCAGCUCGUGUUGUGAAAUGUCCUGUUAAGUCAGGCAACGAGCGAGACCCCCACCACUAGUUGGUAUCCUGGUCUCCGGGCCGGGACCACACUAGUGGGACUGCCGGCGUAAGCCGGAGGAGGGAGGGGGCCACGGCAGGUCAGCAUGCCCCGAAACCCCUGGGCCGCACGCGGGUUACAAUGGCAGGGACAGCGGGAUUCCGACCCCGAAAGGGGAAGGUAAUCCCUUAAACCCUGCCGCAGUUGGGAUCGAGGGCUGAAACUCGCCCUCGUGAACGAGGAAUCCCUAGUAACCGCAGAUCAACAAUCUGCGGUGAAUACGUCCCUGCUCCUUGCACACACCGCCCGUCGCUCCACCCGAGUAGGAGAGGGGUGAGGCCCCUUGCCUUUGGGUGGGGGGUCGAGCUUCUCUCCUGCAAGGGGGGAGAAGUCGUAACAAGGUAGNNGUAGGGGAANNUGCGGCUGGAUCACCUCC |
tRNA met initiator | 4 | 77 | NA | AGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGAUCGUCGGUUCAAAUCCGGCCCCCGCUACCA |
Ss_aIF2beta mRNA | 5 | 14 | NA | UGAGUUCAGAAAAA |
Proteins | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
Small ribosomal subunit protein uS8 | I | 133 | Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct | MVFVNPLANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYVRRYLPSKEIGIIIVSTSKGVMSHKEAARLRIGGVALGYVY |
Small ribosomal subunit protein eS8 | J | 133 | Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct | MGFYQGPDNRKITGGLKGKHRDKRKYEIGNPPTFTTLSAEDIRIKDRTLGGNFKVRLKYTTTANVLDPATNTAKKVKILEILETPANKELARRGIIIRGAKIRTEAGLAVVTSRPGQDGVINAVLLKNESQRS |
Small ribosomal subunit protein uS9 | K | 137 | Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct | MSEEQKLVISSARRKTARATCYIYAGKGRVFVNNVPIELIPIEMVRLKIMEPLLLAGNDIRSKIDAKIITYGGGIMGQADAARMALARALVKFTGSKELEKIYRAYDRTMLAGDPRQTESEKWMRYSARRWRQKSYR |
Small ribosomal subunit protein uS10 | L | 102 | Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct | MPTKARIRLWSTNVENLNYVITQIRGIVEKTGIEMRGPIPLPTSKLEVPIMRLPHGEGRKKWEKWEMRVHKRLIDIAADERVMRQLMRVRVPEDVYIEIQLI |
Small ribosomal subunit protein uS11 | M | 132 | Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct | MSSRREIRWGIAHIYASQNNTLLTISDLTGAEIISRASGGMVVKADREKSSPYAAMLAANKAASDALEKGIMALHIKVRAPGGYGSKTPGPGAQPAIRALARAGFIIGRIEDVTPIPHDTIRRPGGRRGRRV |
Small ribosomal subunit protein uS12 | N | 147 | Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct | MVKSKSPKGIYAARKLRLKRLKFRRSQRKYKTKILKLKEKYDPLGGAPMARGIVLEKVGIESRQPNSAVRKCVRVQLVRNGRVVTAFVPGDGGVNFIDEHDEVIITGIGGTLGRSMGDLPGVRYKVIMVNGVSLDALYKGKKQKPVR |
Small ribosomal subunit protein uS13 | O | 165 | Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct | MSQQFKYVVRIFGQDVDGTMKLPYALAMVKGIGYNTAKAIIRKLGMDPNARLGELSDAEVKKVESVISDHTIKGLPSWLYNRRKDYESGLDLHLVTSDLIFYVRNDIEREKKSRSWRGVRHSLGLKVRGQRTRTTGRTGMTIGVARKKAAQPQSQQSSSQQQKSS |
Small ribosomal subunit protein uS14 | P | 54 | Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct | MGKYKPPAERKYGKGVQSCQRCGSKDSVIQKYGIYLCRQCFREVAYELGFRKYW |
Small ribosomal subunit protein uS15 | Q | 152 | Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct | MNKRRAKGKSHSIRPARAGAPKWVRLTREEVEMLVEELAKRGYTPSMIGIILRDQYGIPLVKQIVGKKVTQILEERGLAPQIPEDLFNLIRKAVNVRRHINEYPRDKTAKKGLEEIESKIRRLTRYYKGIGKLPQEWVYDPAKAELLVAGAS |
Small ribosomal subunit protein uS17 | R | 114 | Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct | MVSKGKTVKDPGIPNITIPEKVCEDEDCPYHGSLRVRGITLEGVIVKYRGTKAAVIERQYLYYDSKYKRYERRRSRIHAHVPPCINVREGDKVIIGECRPLSKSISFVVLGKVS |
aS34 | A | 72 | Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct | MSIKNRGSNAYGHLGWLTVYCRICNRKLIIGTDILYKCPKCEKKYSAYFCEADKRGLKGKCPYCGTELVPIL |
Small ribosomal subunit protein eS17 | S | 79 | Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct | MGNIYTKDIKRIVKEIYDRYKDEIKDDYNTNKQIVIRYVDVKSKKVRNRIAGYLTRYYKIMKEKETSPAEEKEEISEEI |
Small ribosomal subunit protein uS19 | T | 140 | Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct | MSLEIPPEWKNFKYRGKSIDELLNMPMDEFIKLLPSRQRRSLKRGFTDAQRHLLEKVRKYRREGKFNKTIKTHVRNLVILPELIGLKMAVYNGKEFVEFTVTPEMIGHYLGEYSITTKKVEHGEPGLKATRSSLFLAMKG |
Small ribosomal subunit protein eS19 | U | 158 | Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct | MSLIMITAEMVPPDLLIKRLAIYLKENVKTVDPPEWALLAKTASFKERVPDNAEDWWYIRAASLLRKLYVNSIIGIEKTRTIYGGRKRRGTRPEKFVKAPGHVNRLIFQQLEKAGLVQKIKNKGRSLSPKGRSLLDKLALEIFKELAENNTSLKVYLE |
Small ribosomal subunit protein eS24 | V | 120 | Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct | MESQAKVKISDKAEGIIERDMQNSVIGRREISLKVYHMGSGTPSRKDIIKAIIQALGSQENLVVVRKISTSYGAGISNVKLHIYKSREILEKVEPKYLLDRDAGTKQKKGGSKGGQGAKG |
Small ribosomal subunit protein eS27 | W | 66 | Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct | MMRKLRVLIPEPKSRFLRVKCPNCGNEQTIFSHATFPVRCLSCGTELVYSMGGKAKIVGEVVRIMG |
Small ribosomal subunit protein eS28 | X | 83 | Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct | MSEKTQQSQGSSIIEEFGFPAEVIQILDRTGVTGEVTQVRVRVLEGRDKGRILTRNVKGPVRVGDILILRETEREARKITTKR |
Small ribosomal subunit protein eS31 | Y | 75 | Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct | MLELNKRKEEAKVAKEQKVKAIVRTYYVIEGNKVKLKNKKCPRCGSIMAHHLKPNERWSCGKCGYTEFIGASKKR |
Small ribosomal subunit protein uS3 | Z | 229 | Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct | MPNIKRYFLEKSIVKVKIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIKQLAQIFEKVFGLENPQITITNVENPELNARVMAFRLAIALEKGYHFRRAAFISMRRIMNAGALGAEIIISGKLTTERARYEKLKEGIVYKSGQQLEKMIDRAIAIAMLKPGIFGVEVVITKPLKIEDKINLKESPSVPQEVSVTNVTFIEESSQKSEEKSEGEKE |
Large ribosomal subunit protein eL8 | 3 | 127 | Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct | MSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVIIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAILEPGEAKDLVDEIIKRVNEIKGKTSS |
LSU ribosomal protein S26E (Rps26E) | B | 95 | Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct | MPKKRENRGRRKGDKGHVGYISCDQCGARVPEDKAVCVTKMYSPVDASLASELEKKGAIIARYPVTKCYCVNCAVFLGIIKIRAENERKQKARLR |
Small zinc finger protein HVO-2753-like zinc-binding pocket domain-containing protein | C | 65 | Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct | MSVKLSIREEVEPPICSSCGKIIHPREKGVEFYCPNCGEVLIRRDHMCRKQGAEYICPNCGFKGP |
Small ribosomal subunit protein uS4 | D | 181 | Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct | MGDPKKSRKKWETPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAERAVREKQLVGKLLKMGLLKKETATVDDILSLTEQDLLERRLQTIVYKKGLSNTIYQARQLITHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPPVMSQQEGGEIGVKQA |
Small ribosomal subunit protein eS4 | E | 239 | Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct | MAHITRFEAPWFLMISKKQYKWTVRPNAGPHSIEKSIPLAVVIRDYLKLAGTIREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVLPDNVRFMRFSKISADEARYKYVRIINKTTIKEGRIQLNLEDGRNILVDKETAKNFKTLMTLKIELPSQQILDSFTISERSYAIFVGGRNVGIHGIVKNINLSKFKSRKYSVITLESRDGNTYQTNIMNVMSIGREKSDLRVD |
Small ribosomal subunit protein uS5 | F | 214 | Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct | MAEEVPSLNIEEWKPRTSIGSLVKEGKISSIKELFDRNLPITEPEIVDVLLPKLKYEVVDIKVVQKQTDAGEISRYKVLVIMGNMDGYVSIGTGKAKQLRVAIQKAIRDAKMNIIPVRRGCGSWQCTCGEPHSLPFKVVGKAGSVEVDLLPAPKGTGLVVGSVLKTLLTYAGIKDAWSTTKGETRTTENFVRAGYSALYNTYKFVTLQDWVRKR |
Small ribosomal subunit protein eS6 | G | 214 | Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct | MPDFKIVISDPQSVEPKRIKVKVKASDQVKSITGEKDGKAVPQAKVNEKTKQLLNVDTLLTLEITKQEGDKKVKVKGHFKVDVDNSVPDNEVWISKTMAEKFGAEDFEAFAYRTKTLQISVDQNKATNLVGLKIGDVFEANQLIGLPVKLKITGGSDNSGFPMRFDVIGAAKRKILLSGPPGFYPNENGERRRKTIRGNTISQEIVQINTIIVR |
Small ribosomal subunit protein uS7 | H | 193 | Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct | MSLENLQLDIKVFGKWDTKVEIRDPSLKKYISLMPVYLPHTGGRHEHRRFGKAKVPIVERLINQIMRPGRNKGKKHLAYNIVKLAFDIIYLKTGQNPIQVLVRAIENSAPREEVTRIMYGGIVYYVAVDVSPQRRIDLALRHIATGAKDASFNNPKPIEEVLAEEIIAAANNDSKSFAIKRKEEIERIALSSR |
Method: ELECTRON MICROSCOPY
Deposited Date: 2024-07-02 Deposition Author(s): Bourgeois, G. , Coureux, P.D. , Mechulam, Y. , Schmitt, E.