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9FY0

Cryo-em structure of saccharolobus solfataricus 30s initiation complex bound to ss-aif2beta leaderless mrna

PDB DOI: 10.2210/pdb9fy0/pdb

Classification: TRANSLATION
Organism(s): Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct

Deposited: 2024-07-02
Deposition Author(s): Bourgeois, G. , Coureux, P.D. , Mechulam, Y. , Schmitt, E.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.9 Å

9fy0
Literature

Cryo-em structure of saccharolobus solfataricus 30s initiation complex bound to ss-aif2beta leaderless mrna

Bourgeois, G. , Coureux, P.D. , Mechulam, Y. , Schmitt, E.

Primary Citation of Related Structures: 9FY0


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
rRNA 16S 2 1497 NA AAAUCCGGUUGAUCCUGCCGGACCCGACCGCUAUCGGGGUGGGGCUAAGCCAUGGGAGUCGUACGCUCCCGGGCAAGGGAGCGUGGCGGACGGCUGAGUAACACGUGGCUAACCUACCCUGAGGAGGGAGAUAACCCCGGGAAACUGGGGAUAAUCUCCCAUAGGCGAGGAGUCCUGGAACGGUUCCUCGCUGAAAGGCUCAUGGGCUAUUCCCCGCUCAUGAGCGCCUCAGGAUGGGGCUGCGGCCCAUCAGGUAGUUGGGGGGGUAAGGGCCCCCCAAGCCUAUAACGGGUAGGGGCCGUGAGAGCGGGAGCCCCCAGUUGGGCACUGAGACAAGGGCCCAGGCCCUACGGGGCGCACCAGGCGCGAAACGUCCCCAAUGCGCGGAAGCGUGAGGGCGCCACCCCGAGUGCUCCCGUAAGGGAGCUUUUCCCCGCUCUACAAAGGCGGGGGAAUAAGCGGGGGGCAAGUCUGGUGUCAGCCGCCGCGGUAAUACCAGCCCCGCGAGUGGUCGGGACUCUUACUGGGCCUAAAGCGCCCGUAGCCGGCCCGACAAGUCACUCCUUAAAGACCCCGGCUCAACCGGGGGAAUGGGGGUGAUACUGUCGGGCUAGGGGGCGGGAGAGGCCAGCGGUACUCCCGGAGUAGGGGCGAAAUCCUCAGAUCUCGGGAGGACCACCAGUGGCGAAAGCGGCUGGCUAGAACGCGCCCGACGGUGAGGGGCGAAAGCCGGGGCAGCAAAAGGGAUUAGAUACCCCUGUAGUCCCGGCUGUAAACAAUGCAGGCUAGGUGUCACAUGGGCUUAGAGCCCAUGUGGUGCCGCAGGGAAGCCGUUAAGCCUGCNGCCUGGGGAGUACGGUCGCAAGACUGAAACUUAAAGGAAUUGGCGGGGGAGCACCACAAGGGGUGGAACCUGCGGCUCAAUUGGAGXCAACGCCUGGAAUCUUACUAGGGGAGACCGCAGGAUGACGGCCAGGCUAACGACCUUGCCUGACUCGCGGAGAGGAGGUGCAUGGCCGUCGCCAGCUCGUGUUGUGAAAUGUCCUGUUAAGUCAGGCAACGAGCGAGACCCCCACCACUAGUUGGUAUCCUGGUCUCCGGGCCGGGACCACACUAGUGGGACUGCCGGCGUAAGCCGGAGGAGGGAGGGGGCCACGGCAGGUCAGCAUGCCCCGAAACCCCUGGGCCGCACGCGGGUUACAAUGGCAGGGACAGCGGGAUUCCGACCCCGAAAGGGGAAGGUAAUCCCUUAAACCCUGCCGCAGUUGGGAUCGAGGGCUGAAACUCGCCCUCGUGAACGAGGAAUCCCUAGUAACCGCAGAUCAACAAUCUGCGGUGAAUACGUCCCUGCUCCUUGCACACACCGCCCGUCGCUCCACCCGAGUAGGAGAGGGGUGAGGCCCCUUGCCUUUGGGUGGGGGGUCGAGCUUCUCUCCUGCAAGGGGGGAGAAGUCGUAACAAGGUAGNNGUAGGGGAANNUGCGGCUGGAUCACCUCC
tRNA met initiator 4 77 NA AGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGAUCGUCGGUUCAAAUCCGGCCCCCGCUACCA
Ss_aIF2beta mRNA 5 14 NA UGAGUUCAGAAAAA

Proteins
Molecule Chains Sequence Length Organism Sequence
Small ribosomal subunit protein uS8 I 133 Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct MVFVNPLANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYVRRYLPSKEIGIIIVSTSKGVMSHKEAARLRIGGVALGYVY
Small ribosomal subunit protein eS8 J 133 Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct MGFYQGPDNRKITGGLKGKHRDKRKYEIGNPPTFTTLSAEDIRIKDRTLGGNFKVRLKYTTTANVLDPATNTAKKVKILEILETPANKELARRGIIIRGAKIRTEAGLAVVTSRPGQDGVINAVLLKNESQRS
Small ribosomal subunit protein uS9 K 137 Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct MSEEQKLVISSARRKTARATCYIYAGKGRVFVNNVPIELIPIEMVRLKIMEPLLLAGNDIRSKIDAKIITYGGGIMGQADAARMALARALVKFTGSKELEKIYRAYDRTMLAGDPRQTESEKWMRYSARRWRQKSYR
Small ribosomal subunit protein uS10 L 102 Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct MPTKARIRLWSTNVENLNYVITQIRGIVEKTGIEMRGPIPLPTSKLEVPIMRLPHGEGRKKWEKWEMRVHKRLIDIAADERVMRQLMRVRVPEDVYIEIQLI
Small ribosomal subunit protein uS11 M 132 Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct MSSRREIRWGIAHIYASQNNTLLTISDLTGAEIISRASGGMVVKADREKSSPYAAMLAANKAASDALEKGIMALHIKVRAPGGYGSKTPGPGAQPAIRALARAGFIIGRIEDVTPIPHDTIRRPGGRRGRRV
Small ribosomal subunit protein uS12 N 147 Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct MVKSKSPKGIYAARKLRLKRLKFRRSQRKYKTKILKLKEKYDPLGGAPMARGIVLEKVGIESRQPNSAVRKCVRVQLVRNGRVVTAFVPGDGGVNFIDEHDEVIITGIGGTLGRSMGDLPGVRYKVIMVNGVSLDALYKGKKQKPVR
Small ribosomal subunit protein uS13 O 165 Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct MSQQFKYVVRIFGQDVDGTMKLPYALAMVKGIGYNTAKAIIRKLGMDPNARLGELSDAEVKKVESVISDHTIKGLPSWLYNRRKDYESGLDLHLVTSDLIFYVRNDIEREKKSRSWRGVRHSLGLKVRGQRTRTTGRTGMTIGVARKKAAQPQSQQSSSQQQKSS
Small ribosomal subunit protein uS14 P 54 Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct MGKYKPPAERKYGKGVQSCQRCGSKDSVIQKYGIYLCRQCFREVAYELGFRKYW
Small ribosomal subunit protein uS15 Q 152 Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct MNKRRAKGKSHSIRPARAGAPKWVRLTREEVEMLVEELAKRGYTPSMIGIILRDQYGIPLVKQIVGKKVTQILEERGLAPQIPEDLFNLIRKAVNVRRHINEYPRDKTAKKGLEEIESKIRRLTRYYKGIGKLPQEWVYDPAKAELLVAGAS
Small ribosomal subunit protein uS17 R 114 Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct MVSKGKTVKDPGIPNITIPEKVCEDEDCPYHGSLRVRGITLEGVIVKYRGTKAAVIERQYLYYDSKYKRYERRRSRIHAHVPPCINVREGDKVIIGECRPLSKSISFVVLGKVS
aS34 A 72 Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct MSIKNRGSNAYGHLGWLTVYCRICNRKLIIGTDILYKCPKCEKKYSAYFCEADKRGLKGKCPYCGTELVPIL
Small ribosomal subunit protein eS17 S 79 Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct MGNIYTKDIKRIVKEIYDRYKDEIKDDYNTNKQIVIRYVDVKSKKVRNRIAGYLTRYYKIMKEKETSPAEEKEEISEEI
Small ribosomal subunit protein uS19 T 140 Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct MSLEIPPEWKNFKYRGKSIDELLNMPMDEFIKLLPSRQRRSLKRGFTDAQRHLLEKVRKYRREGKFNKTIKTHVRNLVILPELIGLKMAVYNGKEFVEFTVTPEMIGHYLGEYSITTKKVEHGEPGLKATRSSLFLAMKG
Small ribosomal subunit protein eS19 U 158 Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct MSLIMITAEMVPPDLLIKRLAIYLKENVKTVDPPEWALLAKTASFKERVPDNAEDWWYIRAASLLRKLYVNSIIGIEKTRTIYGGRKRRGTRPEKFVKAPGHVNRLIFQQLEKAGLVQKIKNKGRSLSPKGRSLLDKLALEIFKELAENNTSLKVYLE
Small ribosomal subunit protein eS24 V 120 Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct MESQAKVKISDKAEGIIERDMQNSVIGRREISLKVYHMGSGTPSRKDIIKAIIQALGSQENLVVVRKISTSYGAGISNVKLHIYKSREILEKVEPKYLLDRDAGTKQKKGGSKGGQGAKG
Small ribosomal subunit protein eS27 W 66 Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct MMRKLRVLIPEPKSRFLRVKCPNCGNEQTIFSHATFPVRCLSCGTELVYSMGGKAKIVGEVVRIMG
Small ribosomal subunit protein eS28 X 83 Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct MSEKTQQSQGSSIIEEFGFPAEVIQILDRTGVTGEVTQVRVRVLEGRDKGRILTRNVKGPVRVGDILILRETEREARKITTKR
Small ribosomal subunit protein eS31 Y 75 Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct MLELNKRKEEAKVAKEQKVKAIVRTYYVIEGNKVKLKNKKCPRCGSIMAHHLKPNERWSCGKCGYTEFIGASKKR
Small ribosomal subunit protein uS3 Z 229 Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct MPNIKRYFLEKSIVKVKIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIKQLAQIFEKVFGLENPQITITNVENPELNARVMAFRLAIALEKGYHFRRAAFISMRRIMNAGALGAEIIISGKLTTERARYEKLKEGIVYKSGQQLEKMIDRAIAIAMLKPGIFGVEVVITKPLKIEDKINLKESPSVPQEVSVTNVTFIEESSQKSEEKSEGEKE
Large ribosomal subunit protein eL8 3 127 Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct MSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVIIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAILEPGEAKDLVDEIIKRVNEIKGKTSS
LSU ribosomal protein S26E (Rps26E) B 95 Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct MPKKRENRGRRKGDKGHVGYISCDQCGARVPEDKAVCVTKMYSPVDASLASELEKKGAIIARYPVTKCYCVNCAVFLGIIKIRAENERKQKARLR
Small zinc finger protein HVO-2753-like zinc-binding pocket domain-containing protein C 65 Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct MSVKLSIREEVEPPICSSCGKIIHPREKGVEFYCPNCGEVLIRRDHMCRKQGAEYICPNCGFKGP
Small ribosomal subunit protein uS4 D 181 Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct MGDPKKSRKKWETPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAERAVREKQLVGKLLKMGLLKKETATVDDILSLTEQDLLERRLQTIVYKKGLSNTIYQARQLITHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPPVMSQQEGGEIGVKQA
Small ribosomal subunit protein eS4 E 239 Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct MAHITRFEAPWFLMISKKQYKWTVRPNAGPHSIEKSIPLAVVIRDYLKLAGTIREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVLPDNVRFMRFSKISADEARYKYVRIINKTTIKEGRIQLNLEDGRNILVDKETAKNFKTLMTLKIELPSQQILDSFTISERSYAIFVGGRNVGIHGIVKNINLSKFKSRKYSVITLESRDGNTYQTNIMNVMSIGREKSDLRVD
Small ribosomal subunit protein uS5 F 214 Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct MAEEVPSLNIEEWKPRTSIGSLVKEGKISSIKELFDRNLPITEPEIVDVLLPKLKYEVVDIKVVQKQTDAGEISRYKVLVIMGNMDGYVSIGTGKAKQLRVAIQKAIRDAKMNIIPVRRGCGSWQCTCGEPHSLPFKVVGKAGSVEVDLLPAPKGTGLVVGSVLKTLLTYAGIKDAWSTTKGETRTTENFVRAGYSALYNTYKFVTLQDWVRKR
Small ribosomal subunit protein eS6 G 214 Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct MPDFKIVISDPQSVEPKRIKVKVKASDQVKSITGEKDGKAVPQAKVNEKTKQLLNVDTLLTLEITKQEGDKKVKVKGHFKVDVDNSVPDNEVWISKTMAEKFGAEDFEAFAYRTKTLQISVDQNKATNLVGLKIGDVFEANQLIGLPVKLKITGGSDNSGFPMRFDVIGAAKRKILLSGPPGFYPNENGERRRKTIRGNTISQEIVQINTIIVR
Small ribosomal subunit protein uS7 H 193 Escherichia Coli , Saccharolobus Solfataricus P2 , Synthetic Construct MSLENLQLDIKVFGKWDTKVEIRDPSLKKYISLMPVYLPHTGGRHEHRRFGKAKVPIVERLINQIMRPGRNKGKKHLAYNIVKLAFDIIYLKTGQNPIQVLVRAIENSAPREEVTRIMYGGIVYYVAVDVSPQRRIDLALRHIATGAKDASFNNPKPIEEVLAEEIIAAANNDSKSFAIKRKEEIERIALSSR
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-07-02
Deposition Author(s): Bourgeois, G. , Coureux, P.D. , Mechulam, Y. , Schmitt, E.