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FASTA Sequence PDB Format mmCIF Format
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9FNE

Mycobacterial pafbc-bound transcription initiation complex

PDB DOI: 10.2210/pdb9fne/pdb

Classification: TRANSCRIPTION
Organism(s): Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct

Deposited: 2024-06-10
Deposition Author(s): Boehringer, D. , Glockshuber, R. , Mueller, A.U. , Rabl, J. , Schilling, C.M. , Weber-Ban, E. , Zdanowicz, R.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.0 Å

Literature

Mycobacterial pafbc-bound transcription initiation complex

Boehringer, D. , Glockshuber, R. , Mueller, A.U. , Rabl, J. , Schilling, C.M. , Weber-Ban, E. , Zdanowicz, R.

Primary Citation of Related Structures: 9FNE


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA-directed RNA polymerase subunit alpha A 350 Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct MLISQRPTLSEETVAENRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVLHEFTTVPGVKEDVTDIILNLKGLVVSSDDDEPVTMYLRKQGPGVVTAGDIVPPAGVTVHNPDMHIATLNDKGKLEVELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEATRVEQRTDFDKLIIDVETKNSISPRDALASAGGTLVELFGLARELNADSEHIEIGPSPAEADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIKLHQLGLSLKDSPATFDPSEVAGYDAATGTWTSDAGYDLDDNQDYAETEQL
DNA-directed RNA polymerase subunit alpha B 350 Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct MLISQRPTLSEETVAENRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVLHEFTTVPGVKEDVTDIILNLKGLVVSSDDDEPVTMYLRKQGPGVVTAGDIVPPAGVTVHNPDMHIATLNDKGKLEVELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEATRVEQRTDFDKLIIDVETKNSISPRDALASAGGTLVELFGLARELNADSEHIEIGPSPAEADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIKLHQLGLSLKDSPATFDPSEVAGYDAATGTWTSDAGYDLDDNQDYAETEQL
Transcriptional regulator-like protein X 333 Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct GLSAVSKVERLMNLVIALLSTRTYLPAEKIRTTVAGYADSPSDEAFSRMFERDKNELRDLGIPLETGRVSKWDSTEGYRINRDSYALPPIGLTADEAAAVAVATQLWQSPELVTATQNAVLKLRAAGVDVDADGVGVAIASTATLPGVRGSEEVLQSLLSAIDEGRAVQFEHRPSRSADYTTRTVEPWGVVTHRGRWYLVGHDRDREDTRTFRLSRISAAARPIGPAGAVQKPQDVNLRDIVRRAVAEQPTGERARIWIAGGRATALRRQAVTSTPRTIGGRAGEEITVDIGTWDRLAREIASYGSDAVALEPSSLRDDVVERLRAHAAGGER
DNA-directed RNA polymerase subunit beta C 1169 Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct MLEGCILAVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSDRWRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTVPGGVEVPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPTDENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADKTGVIEEVSADYITVMADDGTRQSYRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAPADSTVATPVFDGAQEGELAGLLGSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA
DNA-directed RNA polymerase subunit beta' D 1317 Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWECYCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDLAPKDLEKIIYFAAYVITSVDDEMRHNELSTLEAEMAVEKKAVEDQRDADLEARAQKLEADLAELEAEGAKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVLYRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQKKLRALKRLKVVAAFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDLGAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQRPQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQMAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQAATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLFENGWKPGDAWTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAGFYWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQDATEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVTLAERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTVKVRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVTGGADIVGGLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYDKLSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPAGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
DNA-directed RNA polymerase subunit omega E 107 Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct MSTPHADAQLNAADDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE
RNA polymerase sigma factor SigA F 466 Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct MAATKASPATEEPVKRTATKTPAKKAPAKRAAKSAAAKAGGKAPAKKAPAKRAAKGTAAKPEDGVTDDLEVTDDLEAEPGEDLDVEDTDLELDDLDSDDDTAVEDEEEEADAATPAVATAKAADDDIDEPSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
RNA polymerase-binding protein RbpA J 114 Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct MADRVLRGSRLGAVSYETDRNHDLAPRQVARYRTDNGEEFDVPFADDAEIPGTWLCRNGLEGTLIEGDVPEPKKVKPPRTHWDMLLERRSVEELEELLKERLDLIKAKRRGTGS
PafC Y 318 Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct MSQVSTRLVRLLNMVPYFQANPKVTRAEAAAALGVTGKQLDADLDQLWMCGLPGYSPGDLIDFDFVGDTIEVTFSAGVDHPLRLTSTEATGILVALRALVDVPGMVDPEAARSAIAKIESAVGSQRAVVEGITEDTSAEPGAAATVRTAVRENRALTLEYYSASRDSLATRTVDPIRVVLVGDNSYLEAWCRSAEAVRLFRFDRIVDAQLLDDPAAPPPPAVAAGPDTSLFDADPSLPSATLLIGAAAAWMFDYYPLRDITERPDGSCEATMTYASEDWMARFILGFGAEVQVLAPESLATRVRQAAEAALQAYARCV

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
recA-op non-template strand o 68 NA GTGGTGAAGAGTTCGACCGGACTTGTCGGTGGTCTGCTCTAACGTCACGGCCAACCGATCGGAACACC
recA-op template strand p 68 NA GGTGTTCCGATCGGTACCGGACATGTAAAGAGCAGACCACCGACAAGTCCGGTCGAACTCTTCACCAC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-06-10
Deposition Author(s): Boehringer, D. , Glockshuber, R. , Mueller, A.U. , Rabl, J. , Schilling, C.M. , Weber-Ban, E. , Zdanowicz, R.