9FIA
Ssu(body) structure derived from the ssu sample of the mitoribosome from t. gondii.
PDB DOI: 10.2210/pdb9fia/pdb
Classification: RIBOSOME Organism(s): Toxoplasma Gondii
Deposited: 2024-05-28 Deposition Author(s): Barua, S. , Boissier, F. , Hashem, Y. , Nguyen, T.T. , Rocha, R.E.O.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.29 Å
Ssu(body) structure derived from the ssu sample of the mitoribosome from t. gondii.
Barua, S. , Boissier, F. , Hashem, Y. , Nguyen, T.T. , Rocha, R.E.O.
Primary Citation of Related Structures: 9FIA
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Mitochondrial ribosomal protein, mS145 | B0 | 680 | Toxoplasma Gondii | MPRPLASRRLSALRACRRTSLASVSSAGRYSSLPSAPLSLCFPDAPSVCRPFSVCRSHLYAPFSPESFDSSQRSSAQTYRHRRFISSLAAVSTVRSPTSTGNNPASPSSPVSSSSSSSVLFSSSCVLPAFSASSVSASSASSSVPFSASCVLPAFSCFHSIRERRGDGREGCLRLGSAPPLVALRRLGCEKTSELPALPKTRARFFSVNAGEAPERGEGKDAAENTGERAETQKFREEKDSPEKAGKETEGDSAETTASRAESPTEAKDARGGGGAKDGAEDQPASVAGLSSPPSLSEESEAATTPAPPAASLPPQWWDCPEALVEFLLPPPVENFFSVDGADLDRGRVEAVIRRVYTHSKADLAAPAEPSAWSSDTASATGDAPAPWLQYPEPNALWPNPLLHNHRLKPFLHPARREQGSGEAAESERKRLSGEEADAAALEAKQLRMNKHRLEHLWKFARSYGMSWDALDEVYIRFVQLKRSREAQWEAKRGEILQYAAVVAAREVREKRKKEIEEAGMDLASVQPEHREQMLLPRSLYRKQTRRLFFEWRRSYLAPWRPGGLQKLMKAVVTMRMLQRETRERFLFLDEERSKRREEREEEQARLEEELVTLLQRQAKNGVANLDLEKSEGAAATKDRTSFDIWEFDGVGAKQTGAPDSEEEEEELEGDEELGEEARG |
| DnaJ domain-containing protein | B9 | 233 | Toxoplasma Gondii | MRHRVRSNSLGSCFSVCSPSLEKPSKRLCEPQQTPQRPRKMAGRAFAFPAGPPSGLAKSPVALTRVQAPFVSLLARPYPPVPFCSHTFSSASSLFSCYQLARGYVRPFPVLTRRLRRAFSTAPSSSVSSSPSSRASSSSSSAASSSSSPASPSSAEGSGKTAGSGKKSGESFFLSLCELEQKKRTERAIQHSQDLWKKRTAAKDAHSEKTPELYDGPFWLKFWRRKKRPGARG |
| unidentified peptide | BB | 8 | Toxoplasma Gondii | XXXXXXXX |
| Enoyl-CoA hydratase/isomerase family protein | BC | 716 | Toxoplasma Gondii | MFPAHHFSRGPVFLENADTMRNLFSSLCSLGDRGGKPVCGLRQQQRRRVKINFPVQTAIQERREARQEKNEQSRGSSTLSPPTSSCFSPSAFSPSSSSSFKSLLSCNVSPSSSPLVLRFESRSSRSLFSSFCLSDSPRRPSSSPSPLLLSSTAHAPGSGRRHRETLWCLRSSQRGVRTGFFRTDPGFIDPEDVLFAEDPVRTWSHADGGGDLAEEVLERSNVGMGTCILNNASGVLNMKGLCGLFRKLRDLEVNPLKRFVVLTSRHRHFFSTGFDLKELLFLAELTQKSTEKTIPLVALWQLRNLCDVAYLVHNYTKPLIVLMNGATAGSGASLCCLANRSAAYHSSSFTCDPTAYGWIPDSGMSFVLANLRGSLGVFLALTGHTLSGPDLIWSGLCKHWISPEALPFLELTAEKQLEVSEREAAVLLEEHFLDAPDAYSLDDWEEVIHEHFDAPTVAEVRARLKATASRQSTSVEGQLHAAWARAVLDRLARRSPLAADVTFALIRTVQQLKKQIIQDAGIFRSEWHKIRRTGLSVPFTLQGDCRKQILEAVEDRLVQEALQLELRAALRLLAWSTDTIDGLRSECAGRLNPEYAYRPQWKQSQRFHKESYLTPLQDFFPTISSSRDAASHRAGPHISPSCAYFFPTPEFTVTPRTFFPLSAHPLIRRIHPDFDEETGNDHNPYAMHKLQMQWNHSLFIQERMQALRHFRNVANV |
| Mitochondrial ribosomal protein, mS147 | BF | 304 | Toxoplasma Gondii | MPRGSHRGGVFPVSGLTWGMNRPYLKRGLYQHRRDHIFTPRWGTRTANFNPSALPDGSTRRWENDAFKAWPLYGLPHHVKLYAVNEARYLVPAARCTAGPEITQYILNQLDPGGAGRNCSGIGRPDVRLPLAKPAAPSTTHLPRHLVQIARHVMGEAGEKVRRKALSFASTLSDQGFSPDVFDPFGTPLSERSRIKRLYNLVCEADSWRVKPDSRGGKGSVPAEAVNAFPFVDEKAALVRDLPLAEILYSRHTHRLQSRRHPFWIDMGYKKRIVRIPYLYRRRVAKEEAQEREFGLSRAHGSPL |
| unidentified peptide | BX | 13 | Toxoplasma Gondii | XXXXXXXXXXXXX |
| unidentified peptide | BJ | 21 | Toxoplasma Gondii | XXXXXXXXXXXXXXXXXXXXX |
| Mitochondrial ribosomal protein, mS144 | BW | 547 | Toxoplasma Gondii | MSPLLPVSPVMGRRVSPVSLHALTTPLGIRQRQNLAPRLSPISCRSTVGASPPAASFPPSSSCALSPNLRRAGLSGLLLSSTPGTSCETTRITRRAGASSSSSSSSSPRSSSDFLGSACSCVSACFSSPRLSPFRPPLRFDLAITTRASRMLKDFAAKKQLASQARAFSALTRDSVEIQPAFDRLEGFLLSNLPPEVTNNQQLLSSLLGRSGLPVPPLTDASSSSSSSPSSSSTSSSSSSSNSASILLQRSRLGRTAGRCLVLLPFPSSAFLTGEDRKALQTRLAAVLPAGSTVTACDRNDVENCIEEFERYFFLTEDLQRLGVPSNLRKVVTLSPVPPTYGRREVRDLLREHANVDVDPRDIVFRFRKDGVQGDTCYVLCRSERDAGVVLARIQETAVPNRVHYGQLFGCSFLWASRSALFLCDSQLDYLPARSPFQVFTTGWEGDVSEEEFKNLAYQLRLFPKAVRKFSHPGGEDVSSFFLEFHRMRDAKLTMSRLQLLRRRWRIGANTPFFGFLRMADLRFEDDVKFADEDSAADSDLDEPIDY |
| 30S ribosomal protein S5, putative | HJ | 1140 | Toxoplasma Gondii | MRCPLAPRRQRRLPRDSSSSVSLFLPHRGSLSLSSAFSPSFRRSPCPRSSPCLASSVPPSRLFSSASPNDSRLALKKPLSPSFSSPFAFSRYTRDPELRHLTSTSRVQAPLPLRRCAAPVASLASSPCLSSSRASSASLSPCSLASLGSRSSPFCGGSRRGGERPPCERRASAGCGAAANSFSSAPRPSRLSPSSPFFPSGLGCSSSPAHRARVAGPRLPLRSAFVALFPGQPTRTLCFPAASSALSFSAQPSPPTASASSFQSPRRLHNSHQARVLRRRHVYRDKHLDHVPTERARQLAEQRSAFELPRGTGEPLQGGSRFPGGVMAPHLRVKLEKEKFLRDCMREQENLAALFTETEKETLLGRRGDSRESHEEEPATREAEKQTSEGGKSDEAGKDGGKQEDKQGAAPFGRKLQELESFVGSALRTYRLLRPHALPFYKEDSLLSMQSKLNEATLKHSPLVHDLVELKKRNLSVPSDLLPPDFNALQFSLPVVSARGFLLALSAAANSVAEDLEFLCRRLSVPNLPHPTHPFRLKLLLDALFESFKLRKDPHYAHDWAQRNWPRLQAAMPEPLSELSADSVGLWLKAHLERVIENQRGRHADGRGRLLAQKFPLKSDEEDLYSLADDFIFDHEIVDEQFCDERLSQFPIDKAGELFRRVADFFGLTKGPQPAVNDAVVAQFQNLVYTLDEIGLSNWMKMDTREIEEFLPEGDPPSFAASQQDLDAARLLLKAAARGKANLLDFEALDPYKLLHGFDFKTVQEELATLPPNPFLTDADIDELFDITTAAVSMNQSEVAPSASLRNFKAKFGRTPLEALLDSEEKFLTSAGPVDWLKDEDENGEAFVSWRWKRPAQTVYDAEKGMFVREREGVDPLIKLHELRQTLLSVSRMMSMNKQGRVYYFRAIVAVGNGRGLFGIGIAFGPSPKEARSNAALAAIQNLDHIDFDVGRTLTTPVHGSEYSAHVKIVPRPLGKGLKSNLRYLPLLYLMGIDNCRVSFYGPSASARWFTRAKALKRALEQLQSRRTLANATGQKYDLLVAPGEHWMHWPDRWFRPISTEYARMLERIKKKRPPSYRRGFRAAIDEVIPEEIRPEFTPYTWKSPLQKWAEELKRKRLTSHNVYETEVFLHPPAQSSSPS |
| Acylphosphatase-like domain-containing protein | HS | 235 | Toxoplasma Gondii | MAPFPRGIVKPRSAKVRAILNLSVEQRQPNPLRAPRKSLLDPPPCVAPLEKGNPKLDRQFDTLNRSITGFRKYKAPHTTAPRVVRDRDETNFHEMLGKFRFDLQGSFKENGDMLRDSLLQVGRDLFLVGWVKCRSRFATGHIQGDVHALSYMRRYLEKHVDESVSSVRFYEENFGMPLLEYERLSAVNDFRAPGKKQQHALRAAEKNKAKKLEQESLRHAQELERFYEENCIRNY |
| CHCH domain-containing protein | B4 | 138 | Toxoplasma Gondii | MNGCSKRKSHRLLKPVFELQQSFPKIQHWQGAEILHRLKQKEKDAAVIHPCIDTWGDYAQCLRRYPATSAARCRVESDRHTRCLQQHGRWKPSDSLEALKLLEMFKVFNETARFKYPPPPVHSLVRGCAFPFSDPPKK |
| Ribosomal protein S11, putative | B5 | 393 | Toxoplasma Gondii | MAVHWGVLQCGVERCLPWMKAAASHCCLQRSVGAVRHASVRRFVLFASYSQTRPETQLAVNLGRVVKTPRIHTRDGVSQRRVPYRVDSNSQRKMPVPGHSDSPRERSVSVSNNFADGNISWKESKQRLADSGLKIQSATAGTTHQLPFSSAFPRSSYVSARPRQRLFFSTGSAGTAASTPDVKDAKRSSSEASLSPNSQAALSEIRSNVVRASEKGKALASASSTSGGTGRQVKKQLSKKEMRTLGGHPRRFKLMGGRPEFHHVDRNKNGHIIEPTDKFQVVITTSKNNVHAQVVNKSRAYRTIFGSFAGNVGIRKQAQQGTQCAYRIGQNIARKCRRLGISQVEIKFRRIMRVNQLLQAFTAHGLGVTAIAHEPRLPKCGQNATKPRKRRRV |
| Putative mitochondrial ribosomal protein s6-2 | B6 | 163 | Toxoplasma Gondii | MGKWRWPPAATVRALASFFCCAVSSRTLLRFWFSHCKILSLVKNRKYMMVFYETFVLFSKRVQRADIRQLLKQQEALITKHHGSMLAVRDLGWRKTAFRVIKPRQGIFWFGRLFYFSFGANPAAITEMSQSLQSTNGVLRHATVRMKKRHNLMTYNHHIHARD |
| unidentified peptide | B7 | 12 | Toxoplasma Gondii | XXXXXXXXXXXX |
| unidentified peptide | B8 | 21 | Toxoplasma Gondii | XXXXXXXXXXXXXXXXXXXXX |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| RNA19 | ba | 34 | NA | AGUUCUAUUGUGUUAGCAUGGUUUCGAGAACACU |
| RNA15 | bd | 27 | NA | CGGCGAGAAGGGAAGUGUGUUUCAAAG |
| RNA8 | be | 107 | NA | UAAUACAGGGUUGAACUGUGGGUUAGUUUCAAUGCCCAAGGCAGAGCACUGGAUUGGAUACCCAGGGAACUGUGCUCCCAUUAAUAAGAAUCAUAAUAUAAGUCACC |
| ulr13 | bg | 4 | NA | UUUU |
| ulr14 | bh | 2 | NA | UU |
| ulr15 | bi | 3 | NA | UUU |
| SSUB | bn | 122 | NA | UUCUUUGCCUGGAGGUUUGUUACGUUCCGUACAGUUGUAGGUAAAAGGUAUGUUAGAGACUUAGACUAGCGUUGGAGCACAUUGUUUCAUUCGAUAGUCCACGCUCAAUCUUACCAUACAUA |
| ulr11 | b1 | 8 | NA | UUUUUUUU |
| RNA5 | bk | 83 | NA | ACAGUUACCGUAGCUGUAGAUGAAUGCUAAUUAUAGAGUAUAUCUCCUAUGACACUGCAUAACAUAUAAAUGCUCCUUCCGCC |
| RNA17 | bl | 48 | NA | UUUUAUGAUCCCAGGCUGGUUUAAUAAGUCAAAGUUUAGCCAGAGUCG |
| SSUA | bo | 115 | NA | AGAGGCUUGAUAGUACUACCGUAAGUACAUAAUAUACAGUCCCAGCAGUAGCGGUUAAACUAUAGAAGAGUCGAGUAUUAUCCAUACAUACCAGGCGUAAAAAGCGUUCAUCCAU |
| ulr16 | bp | 15 | NA | UUUUUUUUUUUUUUU |
| ulr17 | bq | 14 | NA | UUUUUUUUUUUUUU |
| url18 | bs | 31 | NA | UUUUUUUUUUUUUUUUUUUUUUUUUUUUUUU |
| SSUF | bt | 60 | NA | ACACAGUCGGUACGAAGUCGAAACAAGGUAGUUGAUGGUGAACCAGUGGCUGAACAAAAA |
| ulr19 | bu | 25 | NA | UUUUUUUUUUUUUUUUUUUUUUUUU |
| ulr20 | bv | 6 | NA | UUUUUU |
| SSUE | b2 | 48 | NA | AAUGAGCGCAUGUAAACUAGUCUUAAACACACCGCUCGUCACGUAACA |
| ulr21 | by | 11 | NA | UUUUUUUUUUU |
| ulr12 | b3 | 5 | NA | UUUUU |
| RNA30 | br | 31 | NA | UAAGAUCAUCGAAUAUAACGGUAUGCUCCUG |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2024-05-28 Deposition Author(s): Barua, S. , Boissier, F. , Hashem, Y. , Nguyen, T.T. , Rocha, R.E.O.