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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9FI8

Ssu(head) structure derived from the ssu sample of the mitoribosome from t. gondii.

PDB DOI: 10.2210/pdb9fi8/pdb

Classification: RIBOSOME
Organism(s): Toxoplasma Gondii

Deposited: 2024-05-28
Deposition Author(s): Barua, S. , Boissier, F. , Hashem, Y. , Nguyen, T.T. , Rocha, R.E.O.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.6 Å

9fi8
Literature

Ssu(head) structure derived from the ssu sample of the mitoribosome from t. gondii.

Barua, S. , Boissier, F. , Hashem, Y. , Nguyen, T.T. , Rocha, R.E.O.

Primary Citation of Related Structures: 9FI8


Proteins
Molecule Chains Sequence Length Organism Sequence
Small ribosomal subunit protein mS29,mS29(DAP3) HA 493 Toxoplasma Gondii VGVEDVGRFRLFDRHRLVELLPEGLAGELSRDVEMIPSATSPIGVMLRKATLELQMQLELFARVHAKSSADTRGETPLPRKRKETRKDGERDAREKKKDEGKDKDGGVGGRGLEEIGSRRSEDEWRERLSELRPFDARLAAVQRGFLLDGHRGVGKSCVLNYLIPWARENNWLVVYEPLPSRYAREIGDIKRSSAGVYIQSSFSQEFLERLGRFNRRLLEELPVARRCYGQAALDGVHRLYAERSYHSLLEKALEKDLDEIREQRDEELKRGSPHSGKDADLLDSQLREEILLARERLALWHTYRREVSIPSMKSRLPNPASVWEIAEFGLQNEAFATQALYEVWEQLKKQTQLNVLIAVDEWNECFPVSEYVSMRYEGTRFNGHIPAFHLSTPRLLSRFDDAQQFQRGLKICATSWRRSNRRDYRPDLLGVRQEEIRTVRNFSPLEFANFVAYYHKKKILHEFPREKLDYFYMLSGGNGFQARRLLASLYGG
30S ribosomal protein S5, putative HJ 441 Toxoplasma Gondii LQELESFVGSALRTYRLLRPHALPFYKEDSLLSMQSKLNEATLKHSPLVHDLVELKKRNLSVPSDLLPPDFNALQFSLPVVSARGFLLALSAAANSVAEDLEFLCRRLSVPNLPHPTHPFRLKLLLDALFESFKLRKDPHYAHDWAQRNWPRLQAAMPEPLSELSADSVGLWLKAHLERVIENQRGRHADGRGRLLAQKFPLKSDEEDLYSLADDFIFDHEIVDEQFCDERLSQFPIDKAGELFRRVADFFGLTKGPQPAVNDAVVAQFQNLVYTLDEIGLSNWMKMDTREIEEFLPEGDPPSFAASQQDLDAARLLLKAAARGKANLLDFEALDPYKLLHGFDFKTVQEELATLPPNPFLTDADIDELFDITTAAVSMNQSEVAPSASLRNFKAKFGRTPLEALLDSEEKFLTSAGPVDWLKDEDENGEAFVSWRWKRPA
mS155 HK 127 Toxoplasma Gondii EEDDSVYRQFACMRRVREEPRLRTALESFKVASKNATKTRGRAWSVYEGWPPRSRVRVGDEYSKVGPLQRRAFVFNRVDGTGRRREPTLAFCCGNKPVLLLSEAEFEALVKKLPWIKHEMAEFKKLL
mS161 HN 26 Toxoplasma Gondii CMNKKNRLALRKRRRRMGERVSLRYR
mS152 HO 168 Toxoplasma Gondii TRGFRWDLCQRGRRRWVHINYPPRNRSTVQMLDESHEKLVFVCNGYIDRLDPRLLPERLRKRLERNRKAALTRFDGKLPWGQAVESAIKRIHTPCLAFAQAHSHHLLEAFSMAEVLEIEKLIPEIREAFKASKAKLAEQEAQDKFTRHVSVDLVDLKEDPVSFPFTLK
Small ribosomal subunit protein mS35 mitochondrial conserved domain-containing protein HP 246 Toxoplasma Gondii KKKRGKKEKVILNAEQVATKTRLPPIRLEDRITPEPPATVARNIRSQISRAVAGWKTKRMFTYRNKYRLRRLVGMTHDIDSDDEFAQANARTRETNASTSKVSSSGCSTEKAEGVNGSTMGRRNRPSFAGRTFVTPLTKLQHQAALPRSPLHARFDFPHTVHYDVFWGPPQVEEEPNKSGCWVSFRVADLKLSDSQEQRLLDILGPERYDEQTGVVCLEADVFPQLNHNAAYLGDILQQLMREVKK
mS141 HQ 757 Toxoplasma Gondii LLDTGEIVPGAFASVKKVGDFPLLPLSLLLSRLKERRQELLRDWQVHAVRQAAVREPLAEATRENDGGAGPRAVEAFAREEERIQRKIKILELLACGGLEENASSQGAIGDAKRIAFLAHADAVNLLLLLAAEAETLARPGEREETEGKEGSSAVGEISKQEERQLWRLKCEGNEEKWNLCISRLKELALDHEDSFLVFYAMCSTNRFDAVLLPALLERLEASFFSSQALSKPLFHPIFEVWDPPCESFAALINVLPLSAKAVVVTADRRSERERRENEGWLAPPEAPPLVLPNWQTMHPVDMEAWEKKQRRVVRTRHVKAKIIRQADGRKLAATMALHGRQAIHRDAAVSSLVSVAAMCASNSQRALRGELLPETLNLLAAELLGRSADALSPHLLSLSFLLSQSSVSLTERLFLHLEAVLRGWLEENGFVEKKQTENVDGESKELCTETASEKRRKASEEQLRNLPPGLNVFGLVQSSPSSSDALLASGERSETSKSADTESALWESRVLAALLSSFLRVDDYRPSLDFVLLLSDALRNSLRRTAVLSSASESSAPLAIHEKDVLSLKETGALLSSFATSGYAVPPSLMACLVEHFLYDVDLFLTSSPLSPFASSPSSSSSSAEEAEQLSQSFFCSSRGRATPGDCATLLHSLASPSPLSSERLAAADKAGEQKTANLEKLRFEAMTQAWRLVAPVLHLLQPPCKLLILNSLQTAHAPPDVSSTAFFQRSLETFLRDNPDVDSSLLGSLFGTQGR
mS33/mS27 HT 405 Toxoplasma Gondii MRRLASPSLRRLQEGQTPHSMRKSAVADARKKIFGYACGMPGEEQWVRPLQGRQMMKWYWPSKYMLQDVQMAQYFQMQAMRFAPRPAHVSLTTLSATMEQCWKKRDAVRAFFQSIDEKVLRENPTLQDLYGLYRTLCPDDPLRTPVDPALWRDPGFTWQHTADQRIVSSSTNREQQGDPSEPAMATRRVAQEQATDKRHISPANINDDVAALLFSRTEQSGAIRNVCAASPYLHGGKNNRSRDRFHNGAREANSSEEDSLEQPKSLILDTESRGTALSRSRTQECLLALSALAETGLGQSASELIQQPVVLRVDIGLGDREPVQDTTAFRKKQEQSRRTLQAALDHDERLARYHGAKHRFFDPLFRRRRLSFLDRFARERIKGEKARQLGAQLYVKHPDQKPVWP
Ribosomal protein S14, putative HD 102 Toxoplasma Gondii LNPPPIAFPSFNRRCQKDWLARRAFAENEVNGRIYKNVYQNLGFKGPIPILNKVGQYRIRMRCISGGYSRGIFRFTRMARMGMLQLAREGWLKKYGYRPGLF
mS149 HG 97 Toxoplasma Gondii PAERLHSLFARADVLAHLLHSRLALPLLYPLNSGGALTNPLNSAASPDSPAALNSIATSRWKREEVMSALATVTPLVLAATSVSRFLKTAHALSYFA
uS10m HC 238 Toxoplasma Gondii ALSAYSLRSLIVTYNSRNRSSMNATIENLKNALRWTSPSESSSPSSAPSSAPSSAPSSSWSPPWPVPRRVGRRQWRVTYLKSPFKYKYALRHYVFEDHRYAFAFYDVNSVQEVVSAALGAMAGETCCSCRFSWRFAGRPPVSLPTPPRLVPSSRAASLLSSRSSSEDGEVSREPVEGGEKTSGVKKAPHLATVLRGHCPTDKEFIRRALEEEQAVERIRKKLDKKQLQWFPGKTPWAP
mS157 HE 177 Toxoplasma Gondii ARRVGGIGRRCFLTLHCSACSFFFQTSDAIKLILTQQHHILRKKGETRFLSGASGDAVHLESVGASNEAQGNRPSSSSSPSSSGGTRDKGVSRRVVAAAASSAASKFSLLPLADASLLLKRRGALVLRSLHGDPLVGSRRQRGEFAPQAPTAEMAKMLNKSCVPCPRCKREGRWEEG
DNA double-strand break repair rad50 ATPase HF 354 Toxoplasma Gondii YITSANFSEPVELLSLAEDLHKAEIYTQTTEKLEKQWPAAGGVAKGIQGDQFFDVMAAAVREDLQDQSRPVLVNELTDHENPYCMKREALRRLVLHACTRNCLDETLTDTLLDRRADLQRLRSKARLPPEVLEPLAAFVGITRFSFDRRARLNQKVTAVQHALRQISLDGVNTAELAEGQDEPTMDAEKVEAVLSVLPENFPSDALHPHHPFRNHFGFESSVPYGVVGSISMGKGRKKIEKELARLRYPTLQRVAHSLPKDLKYRESVAHAIRVLERSRGWDFESKVKAVNALVEVWNRLAPGRTYEKILNHAFPVFRGRGMVKKTRSRAAVFNKGLKYIRSLTTQKPLHARLQ
ms158 HH 90 Toxoplasma Gondii PEAPQPPAGLHWSWWELYVKGVNPEYPPRQRMFAFLTAQGVDVLEMEIREIEDVTRWLEMSNVYGEKFPRFPYDVTFQDKIEALKEKYPL
mS151 HI 144 Toxoplasma Gondii AFRYRREGQFTKFRVHFDRSGFRPYIDELKWEIMDWHYKRAMGPQMKKTLMSYQEGSEKLQYMHDLIALGTAKAKFPHATKRFFFVPALPVTIPYRRSSNPFCLLSANKTGWLQWSPKQRVPFPQPLGKRKVGGTDPQPPVFPK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA5-SSU hl 33 NA CGUAGCUGUAGAUGAAUGCUAAUUAUAGAGUAU
ulr23 hm 10 NA UUUUUUUUUU
RNA19-SSU hr 27 NA UAUUGUGUUAGCAUGGUUUCGAGAACA
ulr24 hs 17 NA UUUUUUUUUUUUUUUUU
SSUD hb 56 NA GGAAGCUGGAAGACGGAAUCGUUAUUAAGCGCCAGGUAGUCCUGGACACUGAAUCC
SSUB-SSU bn 58 NA UAGACUAGCGUUGGAGCACAUUGUUUCAUUCGAUAGUCCACGCUCAAUCUUACCAUAC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-05-28
Deposition Author(s): Barua, S. , Boissier, F. , Hashem, Y. , Nguyen, T.T. , Rocha, R.E.O.