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FASTA Sequence PDB Format mmCIF Format
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9FGT

Sars-cov-2 (b.1.1.529/omicron variant) spike protein in complex with the single chain fragment scfv76 (focused refinement)

PDB DOI: 10.2210/pdb9fgt/pdb

Classification: VIRAL PROTEIN
Organism(s): Enterobacteria Phage T4 , Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2024-05-25
Deposition Author(s): Berlinguer, M. , Bolognesi, M. , Chaves-Sanjuan, A. , De Santis, R. , Milazzo, F.M. , Minenkova, O.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.8 Å

9fgt
Literature

Sars-cov-2 (b.1.1.529/omicron variant) spike protein in complex with the single chain fragment scfv76 (focused refinement)

Berlinguer, M. , Bolognesi, M. , Chaves-Sanjuan, A. , De Santis, R. , Milazzo, F.M. , Minenkova, O.

Primary Citation of Related Structures: 9FGT


Proteins
Molecule Chains Sequence Length Organism Sequence
Spike glycoprotein,Fibritin C 1214 Enterobacteria Phage T4 , Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHVISRFDNPVLPFNDGVYFASIEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLDVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPIIVPEDLPQGFSALEPLVDLPIGINITRFQTLLALHRSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPLRSYSFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLKGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVNVFQTRAGCLIGAEYVNNSYECDIPIGAGICASYQTSQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLKRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKYFGGFNFSQILPDPSKSKRSFIEDLLFNKVTKFKGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNHNAQALNTLVKQLSSKFGAISSVLNDIFSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGRSLEVLFQGPGHHHHHHHHSAWSHPQFEKGGGSGGGGSGGSAWSHPQFEK
Single chain fragment scFv76 E 264 Enterobacteria Phage T4 , Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 RTMEEVQLLQSAGGLVQPGGSLRLSCAASGFTVSANYMSWVRQAPGKGLEWVSVIYPGGSTFYADSVKGRFTISRDNSKNTLYLQMNSLRVEDTAVYYCARDLSVAGAFDIWGQGTLVTVSSGGGGSGGGGSGGGGSEIVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSPYTFGQGTKLEIKRAAAGDYKDDDDKHHHHHH
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-05-25
Deposition Author(s): Berlinguer, M. , Bolognesi, M. , Chaves-Sanjuan, A. , De Santis, R. , Milazzo, F.M. , Minenkova, O.