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9FF5

The structure of g.kaustophilus t-1 scoc-23bp dsdna complex

PDB DOI: 10.2210/pdb9ff5/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Geobacillus Kaustophilus , Synthetic Construct

Deposited: 2024-05-22
Deposition Author(s): Hadad, N. , Pomyalov, S. , Shoham, G. , Shoham, Y. , Shulami, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.5 Å

9ff5
Literature

The structure of g.kaustophilus t-1 scoc-23bp dsdna complex

Hadad, N. , Pomyalov, S. , Shoham, G. , Shoham, Y. , Shulami, S.

Primary Citation of Related Structures: 9FF5


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*AP*AP*TP*AP*TP*TP*AP*TP*TP*AP*AP*CP*AP*AP*AP*AP*TP*AP*AP*TP*AP*TP*T)-3') i 23 NA AATATTATTAACAAAATAATATT
DNA (5'-D(*AP*AP*TP*AP*TP*TP*AP*TP*TP*AP*AP*CP*AP*AP*AP*AP*TP*AP*AP*TP*AP*TP*T)-3') e 23 NA AATATTATTAACAAAATAATATT
DNA (5'-D(*AP*AP*TP*AP*TP*TP*AP*TP*TP*AP*AP*CP*AP*AP*AP*AP*TP*AP*AP*TP*AP*TP*T)-3') f 23 NA AATATTATTAACAAAATAATATT
DNA (5'-D(*AP*AP*TP*AP*TP*TP*AP*TP*TP*TP*TP*GP*TP*TP*AP*AP*TP*AP*AP*TP*AP*TP*T)-3') j 23 NA AATATTATTTTGTTAATAATATT
DNA (5'-D(*AP*AP*TP*AP*TP*TP*AP*TP*TP*TP*TP*GP*TP*TP*AP*AP*TP*AP*AP*TP*AP*TP*T)-3') h 23 NA AATATTATTTTGTTAATAATATT
DNA (5'-D(*AP*AP*TP*AP*TP*AP*TP*T)-3') g 8 NA AATATATT

Proteins
Molecule Chains Sequence Length Organism Sequence
HTH-type transcriptional regulator Hpr B 207 Geobacillus Kaustophilus , Synthetic Construct MKATEQHYSIKEAMLFSQRIAQLSKALWKSIEKDWQRWIKPFDLNINEHHILWIAYHFKGASISEIAKFGVMHVSTAFNFSKKLEEKGLLSFSKKQDDKRNTYIELTEKGEEVLMKLMETYDPTKNAVFNGALPLRELYGKFPEILEMMCIVRNIYGDDFMEIFERAFENIKEDFIEQDGKLVKRKPKTEEHEKELASQANHHHHHH
HTH-type transcriptional regulator Hpr C 207 Geobacillus Kaustophilus , Synthetic Construct MKATEQHYSIKEAMLFSQRIAQLSKALWKSIEKDWQRWIKPFDLNINEHHILWIAYHFKGASISEIAKFGVMHVSTAFNFSKKLEEKGLLSFSKKQDDKRNTYIELTEKGEEVLMKLMETYDPTKNAVFNGALPLRELYGKFPEILEMMCIVRNIYGDDFMEIFERAFENIKEDFIEQDGKLVKRKPKTEEHEKELASQANHHHHHH
HTH-type transcriptional regulator Hpr A 207 Geobacillus Kaustophilus , Synthetic Construct MKATEQHYSIKEAMLFSQRIAQLSKALWKSIEKDWQRWIKPFDLNINEHHILWIAYHFKGASISEIAKFGVMHVSTAFNFSKKLEEKGLLSFSKKQDDKRNTYIELTEKGEEVLMKLMETYDPTKNAVFNGALPLRELYGKFPEILEMMCIVRNIYGDDFMEIFERAFENIKEDFIEQDGKLVKRKPKTEEHEKELASQANHHHHHH
HTH-type transcriptional regulator Hpr D 207 Geobacillus Kaustophilus , Synthetic Construct MKATEQHYSIKEAMLFSQRIAQLSKALWKSIEKDWQRWIKPFDLNINEHHILWIAYHFKGASISEIAKFGVMHVSTAFNFSKKLEEKGLLSFSKKQDDKRNTYIELTEKGEEVLMKLMETYDPTKNAVFNGALPLRELYGKFPEILEMMCIVRNIYGDDFMEIFERAFENIKEDFIEQDGKLVKRKPKTEEHEKELASQANHHHHHH
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2024-05-22
Deposition Author(s): Hadad, N. , Pomyalov, S. , Shoham, G. , Shoham, Y. , Shulami, S.