9FF4
The structure of g.kaustophilus t-1 scoc-17bp dsdna complex
PDB DOI: 10.2210/pdb9ff4/pdb
Classification: DNA BINDING PROTEIN Organism(s): Geobacillus Kaustophilus , Synthetic Construct
Deposited: 2024-05-22 Deposition Author(s): Hadad, N. , Pomyalov, S. , Shoham, G. , Shoham, Y. , Shulami, S.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.8 Å
The structure of g.kaustophilus t-1 scoc-17bp dsdna complex
Hadad, N. , Pomyalov, S. , Shoham, G. , Shoham, Y. , Shulami, S.
Primary Citation of Related Structures: 9FF4
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| HTH-type transcriptional regulator Hpr | B | 207 | Geobacillus Kaustophilus , Synthetic Construct | MKATEQHYSIKEAMLFSQRIAQLSKALWKSIEKDWQRWIKPFDLNINEHHILWIAYHFKGASISEIAKFGVMHVSTAFNFSKKLEEKGLLSFSKKQDDKRNTYIELTEKGEEVLMKLMETYDPTKNAVFNGALPLRELYGKFPEILEMMCIVRNIYGDDFMEIFERAFENIKEDFIEQDGKLVKRKPKTEEHEKELASQANHHHHHH |
| HTH-type transcriptional regulator Hpr | C | 207 | Geobacillus Kaustophilus , Synthetic Construct | MKATEQHYSIKEAMLFSQRIAQLSKALWKSIEKDWQRWIKPFDLNINEHHILWIAYHFKGASISEIAKFGVMHVSTAFNFSKKLEEKGLLSFSKKQDDKRNTYIELTEKGEEVLMKLMETYDPTKNAVFNGALPLRELYGKFPEILEMMCIVRNIYGDDFMEIFERAFENIKEDFIEQDGKLVKRKPKTEEHEKELASQANHHHHHH |
| HTH-type transcriptional regulator Hpr | A | 207 | Geobacillus Kaustophilus , Synthetic Construct | MKATEQHYSIKEAMLFSQRIAQLSKALWKSIEKDWQRWIKPFDLNINEHHILWIAYHFKGASISEIAKFGVMHVSTAFNFSKKLEEKGLLSFSKKQDDKRNTYIELTEKGEEVLMKLMETYDPTKNAVFNGALPLRELYGKFPEILEMMCIVRNIYGDDFMEIFERAFENIKEDFIEQDGKLVKRKPKTEEHEKELASQANHHHHHH |
| HTH-type transcriptional regulator Hpr | D | 207 | Geobacillus Kaustophilus , Synthetic Construct | MKATEQHYSIKEAMLFSQRIAQLSKALWKSIEKDWQRWIKPFDLNINEHHILWIAYHFKGASISEIAKFGVMHVSTAFNFSKKLEEKGLLSFSKKQDDKRNTYIELTEKGEEVLMKLMETYDPTKNAVFNGALPLRELYGKFPEILEMMCIVRNIYGDDFMEIFERAFENIKEDFIEQDGKLVKRKPKTEEHEKELASQANHHHHHH |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (5'-D(*TP*AP*AP*TP*AP*AP*AP*AP*TP*AP*AP*AP*AP*AP*AP*AP*TP*C)-3') | h | 18 | NA | TAATAAAATAAAAAAATC |
| DNA (5'-D(*TP*AP*AP*TP*AP*AP*AP*AP*TP*AP*AP*AP*AP*AP*AP*AP*TP*C)-3') | m | 18 | NA | TAATAAAATAAAAAAATC |
| DNA (5'-D(*TP*AP*AP*TP*AP*AP*AP*AP*TP*AP*AP*AP*AP*AP*AP*AP*TP*C)-3') | g | 18 | NA | TAATAAAATAAAAAAATC |
| DNA (5'-D(*TP*AP*AP*TP*AP*AP*AP*AP*TP*AP*AP*AP*AP*AP*AP*AP*TP*C)-3') | k | 18 | NA | TAATAAAATAAAAAAATC |
| DNA (5'-D(*AP*GP*AP*TP*TP*TP*TP*TP*TP*TP*AP*TP*TP*TP*TP*AP*T)-3') | l | 18 | NA | AGATTTTTTTATTTTATT |
| DNA (5'-D(*AP*GP*AP*TP*TP*TP*TP*TP*TP*TP*AP*TP*TP*TP*TP*AP*T)-3') | f | 18 | NA | AGATTTTTTTATTTTATT |
| DNA (5'-D(*AP*GP*AP*TP*TP*TP*TP*TP*TP*TP*AP*TP*TP*TP*TP*AP*T)-3') | j | 18 | NA | AGATTTTTTTATTTTATT |
| DNA (5'-D(*AP*GP*AP*TP*TP*TP*TP*TP*TP*TP*AP*TP*TP*TP*TP*AP*T)-3') | n | 18 | NA | AGATTTTTTTATTTTATT |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2024-05-22 Deposition Author(s): Hadad, N. , Pomyalov, S. , Shoham, G. , Shoham, Y. , Shulami, S.