9ES9
Cryo-em structure of spinacia oleracea cytochrome b6f complex with inhibitor dbmib bound at plastoquinol oxidation site
PDB DOI: 10.2210/pdb9es9/pdb
Classification: OXIDOREDUCTASE Organism(s): Spinacia Oleracea
Deposited: 2024-03-25 Deposition Author(s): Glatt, S. , Indyka, P. , Jaciuk, M. , Koziej, L. , Mielecki, B. , Osyczka, A. , Pietras, R. , Pintscher, S. , Rawski, M. , Szwalec, M. , Wazny, G. , Wojcik-Augustyn, A.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.33 Å
Cryo-em structure of spinacia oleracea cytochrome b6f complex with inhibitor dbmib bound at plastoquinol oxidation site
Glatt, S. , Indyka, P. , Jaciuk, M. , Koziej, L. , Mielecki, B. , Osyczka, A. , Pietras, R. , Pintscher, S. , Rawski, M. , Szwalec, M. , Wazny, G. , Wojcik-Augustyn, A.
Primary Citation of Related Structures: 9ES9
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Cytochrome b6 | A | 215 | Spinacia Oleracea | MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTDAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLGVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL |
| Cytochrome b6 | I | 215 | Spinacia Oleracea | MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTDAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLGVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL |
| Cytochrome b6-f complex subunit 4 | B | 160 | Spinacia Oleracea | MGVTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVNKFQNPFRRPVATTVFLVGTVVALWLGIGATLPIDKSLTLGLF |
| Cytochrome b6-f complex subunit 4 | J | 160 | Spinacia Oleracea | MGVTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVNKFQNPFRRPVATTVFLVGTVVALWLGIGATLPIDKSLTLGLF |
| Cytochrome f | C | 320 | Spinacia Oleracea | MQTINTFSWIKEQITRSISISLILYIITRSSIANAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPDRISPEMKEKMGNLSFQSYRPNKQNILVIGPVPGQKYSEITFPILAPDPATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNSTATGIVKKIVRKEKGGYEINIADASDGREVVDIIPRGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEVVLQDPLRIQGLLFFFASVILAQIFLVLKKKQFEKVQLSEMNF |
| Cytochrome f | K | 320 | Spinacia Oleracea | MQTINTFSWIKEQITRSISISLILYIITRSSIANAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPDRISPEMKEKMGNLSFQSYRPNKQNILVIGPVPGQKYSEITFPILAPDPATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNSTATGIVKKIVRKEKGGYEINIADASDGREVVDIIPRGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEVVLQDPLRIQGLLFFFASVILAQIFLVLKKKQFEKVQLSEMNF |
| Cytochrome b6-f complex iron-sulfur subunit, chloroplastic | D | 230 | Spinacia Oleracea | MASFTLSSATPSQLCSSKNGMFAPSLALAKAGRVNVLISKERIRGMKLTCQATSIPADNVPDMQKRETLNLLLLGALSLPTGYMLLPYASFFVPPGGGAGTGGTIAKDALGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHCDVDDGKVVFVPWTETDFRTGEAPWWSA |
| Cytochrome b6-f complex iron-sulfur subunit, chloroplastic | L | 230 | Spinacia Oleracea | MASFTLSSATPSQLCSSKNGMFAPSLALAKAGRVNVLISKERIRGMKLTCQATSIPADNVPDMQKRETLNLLLLGALSLPTGYMLLPYASFFVPPGGGAGTGGTIAKDALGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHCDVDDGKVVFVPWTETDFRTGEAPWWSA |
| Cytochrome b6-f complex subunit 6 | E | 31 | Spinacia Oleracea | MFTLTSYFGFLLAALTITSALFIGLNKIRLI |
| Cytochrome b6-f complex subunit 6 | M | 31 | Spinacia Oleracea | MFTLTSYFGFLLAALTITSALFIGLNKIRLI |
| cytochrome b6-f complex subunit 7 | F | 131 | Spinacia Oleracea | MATAAASTTLSSAAVPAISGSRGQRKMNKVVYMSGVNSYGGLKANNAVLGLGQAVCTEQCFANVVSSLRSTATKKGRSGGGGGAGGGALTSTCNAAAEIFRIAAVMNGLTLVGVAIGFVLLRIEATVEEAE |
| cytochrome b6-f complex subunit 7 | N | 131 | Spinacia Oleracea | MATAAASTTLSSAAVPAISGSRGQRKMNKVVYMSGVNSYGGLKANNAVLGLGQAVCTEQCFANVVSSLRSTATKKGRSGGGGGAGGGALTSTCNAAAEIFRIAAVMNGLTLVGVAIGFVLLRIEATVEEAE |
| Cytochrome b6-f complex subunit 5 | G | 37 | Spinacia Oleracea | MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL |
| Cytochrome b6-f complex subunit 5 | O | 37 | Spinacia Oleracea | MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL |
| Cytochrome b6-f complex subunit 8 | H | 29 | Spinacia Oleracea | MDIVSLAWAALMVVFTFSLSLVVWGRSGL |
| Cytochrome b6-f complex subunit 8 | P | 29 | Spinacia Oleracea | MDIVSLAWAALMVVFTFSLSLVVWGRSGL |
| Thylakoid soluble phosphoprotein | Q | 103 | Spinacia Oleracea | MSSLPFVFGAAASSRVVTAAAAKGTAETKQEKSFVDWLLGKITKEDQFYETDPILRGGDVKSSGSTSGKKGGTTSGKKGTVSIPSKKKNGNGGVFGGLFAKKD |
| Thylakoid soluble phosphoprotein | R | 103 | Spinacia Oleracea | MSSLPFVFGAAASSRVVTAAAAKGTAETKQEKSFVDWLLGKITKEDQFYETDPILRGGDVKSSGSTSGKKGGTTSGKKGTVSIPSKKKNGNGGVFGGLFAKKD |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2024-03-25 Deposition Author(s): Glatt, S. , Indyka, P. , Jaciuk, M. , Koziej, L. , Mielecki, B. , Osyczka, A. , Pietras, R. , Pintscher, S. , Rawski, M. , Szwalec, M. , Wazny, G. , Wojcik-Augustyn, A.