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9EMI

Kod-h4 dna polymerase mutant in a ternary complex containing six hna nucleotides and a non-hydrolyzable triphosphate

PDB DOI: 10.2210/pdb9emi/pdb

Classification: TRANSFERASE
Organism(s): Thermococcus Kodakarensis Kod1 , Synthetic Construct

Deposited: 2024-03-08
Deposition Author(s): Betz, K. , Gutfreund, C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.27 Å

9emi
Literature

Kod-h4 dna polymerase mutant in a ternary complex containing six hna nucleotides and a non-hydrolyzable triphosphate

Betz, K. , Gutfreund, C.

Primary Citation of Related Structures: 9EMI


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase A 774 Thermococcus Kodakarensis Kod1 , Synthetic Construct MILDTDYITEDGKPVIRIFKKENGEFKIEYDRTFEPYFYALLKDDSAIEEVKKITAERHGTVVTVKRVEKVQKKFLGRPVEVWKLYFTHPQDQPAIRDKIREHPAVIDIYEYDTPFAKRYLIDKGLVPMEGDEELKMLAFAIATLYHEGEEFAEGPILMISYADEEGARVITWKNVDLPYVDVVSTEREMIKRFLRVVKEKDPDVLITYNGDNFDFAYLKKRCEKLGINFALGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINLPTYTLEAVYEAVFGQPKEKVYAEEITTAWETGENLERVARYSMEDAKVTYELGKEFLPMEAQLSRLIGQSLWDVSRSSTGNLVEWFLLRKAYERNELAPNKPDEKELARRRQKYEGGYVKEPERGLWENIVYLDFRSLYPSIIITHNVSPDTLNREGCGEYDVAPQVGHRFCKDLPGFIPSLLGDLLEERQKIKKKMKATIDPIERKLLDYRQRLIKILANSVYGHMGFENARWYCKECAESVTAWGREYLTMTIKEIEEKYGFKVIYSDTDGFFATIPGADAETVKKKAMEFLKYINAKLPGALELEYEGFYKRGFFVTKKKYAVIDEEGKITTRGLEIVRRDWSEIAKETQARVLEALLKDGDVEKAVRIVKEVTEKLSKYEVPPEKLVIHKQITRDLKDYKATGPHVAVAKRLAARGVKIRPGTVISYIVLKGSGRIGDRAIPFDEFDPTKHRYDAEYYIEKQVLPAVERILRAFGYRKEDLRYQKTRQVGLSAWLKPKGT

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*CP*AP*CP*A*(XG4))-3') p 13 NA GACCACGGCCACA
DNA (5'-D(*(6HA)P*(6HA)P*(6HC)P*(6HT)P*(6HG)P*(6HT)P*GP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3') t 16 NA AACTGTGGCCGTGGTC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2024-03-08
Deposition Author(s): Betz, K. , Gutfreund, C.