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9EJC
Cryo-em structure of cxcl1-kshv orf74-gi-scfv16 complex
PDB DOI: 10.2210/pdb9ejc/pdb
Classification: VIRAL PROTEIN/SIGNALING PROTEIN Organism(s): Homo Sapiens , Human Gammaherpesvirus 8 , Mus Musculus
Deposited: 2024-11-27 Deposition Author(s): Dai, X. , Jung, J. , Sahoo, B. , Seo, H.D.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.98 Å
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 | B | 360 | Homo Sapiens , Human Gammaherpesvirus 8 , Mus Musculus | HHHHHHHHLEVLFQGPPGSSGSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN |
| Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 | C | 71 | Homo Sapiens , Human Gammaherpesvirus 8 , Mus Musculus | MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENPFREKKFFCAIL |
| viral G-protein coupled receptor | E | 348 | Homo Sapiens , Human Gammaherpesvirus 8 , Mus Musculus | MAAEDFLTIFLDDDESWNETLNMSGYDYSCNFSLEVSVCEMTTVVPYTWNVGILSLIFLINVLGNGLVTYIFCKHRSRAGAIDILLLGICLNSLCLSISLLAEVLMFLFPNIISTGLCRLEIFFYYLYVYLDIFSVVCVSLVRYLLVAYSTRSWPKKQSLGWVLTSAAWLIALVLSGDACRHRSRVVDPVSKQAMCYENAGNMTADWRLHVRTVSVTAGFLLPLALLILFYALTWCVVRRTKLQARRKVRGVIVAVVVLFFVFCFPYHVLNLLDTLLRRRWIRDSCYTRGLINVGLAVTSLLQALYSAVVPLIYSCLGSLFRQRMYGLFQSLRQSFMSGADYKDDDDK |
| Growth-regulated alpha protein | F | 91 | Homo Sapiens , Human Gammaherpesvirus 8 , Mus Musculus | ASVATELRCQCLQTLQGIHPKCIQSVNVKSPGPHCAQTEVIATLKNGRKACLNPASPIVKKIIEKMLNSDKSNLEVLFQGPHHHHHHHHHH |
| Guanine nucleotide-binding protein G(i) subunit alpha-1 | A | 354 | Homo Sapiens , Human Gammaherpesvirus 8 , Mus Musculus | MGCTLSAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF |
| scFv Recombinant Mouse Monoclonal Antibody (scFv16) | D | 287 | Homo Sapiens , Human Gammaherpesvirus 8 , Mus Musculus | METDTLLLWVLLLWVPGSTGDVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLELKAAALEVLFQGPHHHHHHHH |
Experimental Data
Method: ELECTRON MICROSCOPY