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FASTA Sequence PDB Format mmCIF Format
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9E9V

Structural insights into hiv-1 vif-mediated ubiquitination and degradation of apobec3h

PDB DOI: 10.2210/pdb9e9v/pdb

Classification: VIRAL PROTEIN/RNA
Organism(s): Escherichia Coli Bl21(De3) , Homo Sapiens , Human Immunodeficiency Virus 1 , Pan Troglodytes

Deposited: 2024-11-08
Deposition Author(s): Matsuo, H. , Skorupka, K.A.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.0 Å

9e9v
Literature

Structural insights into hiv-1 vif-mediated ubiquitination and degradation of apobec3h

Matsuo, H. , Skorupka, K.A.

Primary Citation of Related Structures: 9E9V


Proteins
Molecule Chains Sequence Length Organism Sequence
single-stranded DNA cytosine deaminase A 183 Escherichia Coli Bl21(De3) , Homo Sapiens , Human Immunodeficiency Virus 1 , Pan Troglodytes MALLTAETFRLQFNNRRRLRRPYYPRKALLCYQLTPQNGSTPTRGYFENKKKCHAEICFINEIKSMGLDETQCYQVTCYLTWSPCSSCAWKLVDFIQAHDHLNLRIFASRLYYHWCKPQQEGLRLLCGSQVPVEVMGLPEFNDCWENFVDHEKPLSFDPCKMLEELDKNSRAIKRRLERIKQS
single-stranded DNA cytosine deaminase B 183 Escherichia Coli Bl21(De3) , Homo Sapiens , Human Immunodeficiency Virus 1 , Pan Troglodytes MALLTAETFRLQFNNRRRLRRPYYPRKALLCYQLTPQNGSTPTRGYFENKKKCHAEICFINEIKSMGLDETQCYQVTCYLTWSPCSSCAWKLVDFIQAHDHLNLRIFASRLYYHWCKPQQEGLRLLCGSQVPVEVMGLPEFNDCWENFVDHEKPLSFDPCKMLEELDKNSRAIKRRLERIKQS
single-stranded DNA cytosine deaminase E 183 Escherichia Coli Bl21(De3) , Homo Sapiens , Human Immunodeficiency Virus 1 , Pan Troglodytes MALLTAETFRLQFNNRRRLRRPYYPRKALLCYQLTPQNGSTPTRGYFENKKKCHAEICFINEIKSMGLDETQCYQVTCYLTWSPCSSCAWKLVDFIQAHDHLNLRIFASRLYYHWCKPQQEGLRLLCGSQVPVEVMGLPEFNDCWENFVDHEKPLSFDPCKMLEELDKNSRAIKRRLERIKQS
Elongin-C N 96 Escherichia Coli Bl21(De3) , Homo Sapiens , Human Immunodeficiency Virus 1 , Pan Troglodytes MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
Elongin-B M 102 Escherichia Coli Bl21(De3) , Homo Sapiens , Human Immunodeficiency Virus 1 , Pan Troglodytes MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADDTFEALCIEPFSSPPELPDV
Virion infectivity factor P 176 Escherichia Coli Bl21(De3) , Homo Sapiens , Human Immunodeficiency Virus 1 , Pan Troglodytes MENRWQVMIVWQVDRMRINTWKRLVKHHMYISRKAKDWFYRHHYESTNPKISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPDLADQLIHLHYFDCFSESAIRNTILGRIVSPRCEYQAGHNKVGSLQYLALAALIKPKQIKPPLPSVRKLTEDRWNK
Virion infectivity factor T 176 Escherichia Coli Bl21(De3) , Homo Sapiens , Human Immunodeficiency Virus 1 , Pan Troglodytes MENRWQVMIVWQVDRMRINTWKRLVKHHMYISRKAKDWFYRHHYESTNPKISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPDLADQLIHLHYFDCFSESAIRNTILGRIVSPRCEYQAGHNKVGSLQYLALAALIKPKQIKPPLPSVRKLTEDRWNK
Core-binding factor subunit beta O 170 Escherichia Coli Bl21(De3) , Homo Sapiens , Human Immunodeficiency Virus 1 , Pan Troglodytes MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQEDALAQQAFEEARRRTREFEDRDRSHREEMEVRVSQ
Core-binding factor subunit beta S 170 Escherichia Coli Bl21(De3) , Homo Sapiens , Human Immunodeficiency Virus 1 , Pan Troglodytes MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQEDALAQQAFEEARRRTREFEDRDRSHREEMEVRVSQ

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (5'-R(P*CP*CP*CP*GP*GP*CP*A)-3') d 10 NA AUACCCGGCA
RNA (5'-R(P*CP*CP*CP*GP*GP*CP*A)-3') h 10 NA AUACCCGGCA
RNA (5'-R(P*GP*CP*CP*GP*GP*G)-3') c 9 NA UGCCGGGUA
RNA (5'-R(P*GP*CP*CP*GP*GP*G)-3') g 9 NA UGCCGGGUA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-11-08
Deposition Author(s): Matsuo, H. , Skorupka, K.A.