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9DVT

Cryo-em structure of rpaa bound to pkaibc dna and the ctd of the alpha subunit of rnap from the cyanobacterium synechococcus elongatus

PDB DOI: 10.2210/pdb9dvt/pdb

Classification: DNA BINDING PROTEIN/DNA
Organism(s): Synechococcus Elongatus , Synechococcus Elongatus Pcc 7942 = Fachb-805 , Synthetic Construct

Deposited: 2024-10-08
Deposition Author(s): Corbett, K.D. , Fang, M. , Golden, S.E. , Gu, Y. , Leanca, M. , Liwang, A. , Matyszewski, M. , Yuzenkova, Y.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.74 Å

Literature

Cryo-em structure of rpaa bound to pkaibc dna and the ctd of the alpha subunit of rnap from the cyanobacterium synechococcus elongatus

Corbett, K.D. , Fang, M. , Golden, S.E. , Gu, Y. , Leanca, M. , Liwang, A. , Matyszewski, M. , Yuzenkova, Y.

Primary Citation of Related Structures: 9DVT


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Non-template DNA 1 105 NA CTGAAAACCTGAAAAGGTAAAGGAGGTCTTAAGCTCGGCTCAATTTCTCTCTTTATCCTGTTAGATGGTTTGATTGCTGTTGCTACCCCGTTGATCTGCGTATGA
Template DNA 2 105 NA TCATACGCAGATCAACGGGGTAGCAACAGCAATCAAACCATCTAACAGGATAAAGAGAGAAATTGAGCCGAGCTTAAGACCTCCTTTACCTTTTCAGGTTTTCAG

Proteins
Molecule Chains Sequence Length Organism Sequence
DNA-directed RNA polymerase subunit alpha A 309 Synechococcus Elongatus , Synechococcus Elongatus Pcc 7942 = Fachb-805 , Synthetic Construct MTFQVECVESRTEADQGQYGRFSIEPLARGQGTTVGNALRRVLLSNLEGTAVTAVRIGGVNHEFATIPGVREDVLDILLNVRELVVHAHSPQPQIGRLRVVGPATVTAADVDFGPEVEVINPNHYIASLSEGATLEMELKVEWGTGYRAIDRSHDETTALDFLQLDAVFMPVRRVNYSVEDARVGESTAIDRLVLEVWTNGSLSPQEALSQAASCLVALFEPLKNVSVGSTHTADPEPTPESQTPIEDLQLSVRAYNCLKRAQVNSVADLLSYTYEDLLEIKNFGQKSAEEVVEALERIGIKLQESKVS
DNA-binding dual master transcriptional regulator RpaA R 249 Synechococcus Elongatus , Synechococcus Elongatus Pcc 7942 = Fachb-805 , Synthetic Construct MKPRILVIDDDSAILELVAVNLEMSGYDVRKAEDGIKGQALAVQLVPDLIMLDLMLPRVDGFTVCQRLRRDERTAEIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLQRTDRIPHAARHSEILSYGPLTLIPERFEAIWFNRTVKLTHLEFELLHCLLQRHGQTVAPSEILKEVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLELPAETELHQHADQFPSAS
DNA-binding dual master transcriptional regulator RpaA S 249 Synechococcus Elongatus , Synechococcus Elongatus Pcc 7942 = Fachb-805 , Synthetic Construct MKPRILVIDDDSAILELVAVNLEMSGYDVRKAEDGIKGQALAVQLVPDLIMLDLMLPRVDGFTVCQRLRRDERTAEIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLQRTDRIPHAARHSEILSYGPLTLIPERFEAIWFNRTVKLTHLEFELLHCLLQRHGQTVAPSEILKEVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLELPAETELHQHADQFPSAS
RNA polymerase sigma factor SigA1 G 399 Synechococcus Elongatus , Synechococcus Elongatus Pcc 7942 = Fachb-805 , Synthetic Construct MTQLISIDKEQEEAGMTQATELLDPALKPAETKAKRSSRKKATTAVVEPATTIAPTADVDAIDDEDSVGEDEDAAAKAKAKVRKTYTEDSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILKEYIR
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-10-08
Deposition Author(s): Corbett, K.D. , Fang, M. , Golden, S.E. , Gu, Y. , Leanca, M. , Liwang, A. , Matyszewski, M. , Yuzenkova, Y.