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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9DOU

Taeniopygia guttata r2 retrotransposon (r2tg) initiating target-primed reverse transcription

PDB DOI: 10.2210/pdb9dou/pdb

Classification: RNA BINDING PROTEIN/RNA/DNA
Organism(s): Taeniopygia Guttata , Synthetic Construct

Deposited: 2024-09-19
Deposition Author(s): Edmonds, K.H.K. , Wilkinson, M.E. , Zhang, F.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.2 Å

Literature

Taeniopygia guttata r2 retrotransposon (r2tg) initiating target-primed reverse transcription

Edmonds, K.H.K. , Wilkinson, M.E. , Zhang, F.

Primary Citation of Related Structures: 9DOU


Proteins
Molecule Chains Sequence Length Organism Sequence
R2Tg retrotransposon ORF A 1390 Taeniopygia Guttata , Synthetic Construct MASCPKPGPPVSAGAMSLESGLTTHSVLAIERGPNSLANSGSDFGGGGLGLPLRLLRVSVGTQTSRSDWVDLVSWSHPGPTSKSQQVDLVSLFPKHRVDLLSKNDQVDLVAQFLPSKFPPNLAENDLALLVNLEFYRSDLHVYECVHFAAHWEGLSGLPEVYEQLAPQPCVGETLHSSLPRDSELFVPEEGSSEKESEDAPKTSPPTPGKHGLEQTGEEKVMVTVPDKNPPCPCCGTRVNSVLNLIEHLKVSHGKRGVCFRCAKCGKENSNYHSVVCHFPKCRGPETEKAPAGEWICEVCNRDFTTKIGLGQHKRLAHPAVRNQERIVASQPKETSNRGAHKRCWTKEEEELLIRLEAQFEGNKNINKLIAEHITTKTAKQISDKRRLLSRKPAEEPREEPGTCHHTRRAAASLRTEPEMSHHAQAEDRDNGPGRRPLPGRAAAGGRTMDEIRRHPDKGNGQQRPTKQKSEEQLQAYYKKTLEERLSAGALNTFPRAFKQVMEGRDIKLVINQTAQDCFGCLESISQIRTATRDKKDTVTREKHPKKPFQKWMKDRAIKKGNYLRFQRLFYLDRGKLAKIILDDIECLSCDIPLSEIYSVFKTRWETTGSFKSLGDFKTYGKADNTAFRELITAKEIEKNVQEMSKGSAPGPDGITLGDVVKMDPEFSRTMEIFNLWLTTGKIPDMVRGCRTVLIPKSSKPDRLKDINNWRPITIGSILLRLFSRIVTARLSKACPLNPRQRGFIRAAGCSENLKLLQTIIWSAKREHRPLGVVFVDIAKAFDTVSHQHIIHALQQREVDPHIVGLVSNMYENISTYITTKRNTHTDKIQIRVGVKQGDPMSPLLFNLAMDPLLCKLEESGKGYHRGQSSITAMAFADDLVLLSDSWENMNTNISILETFCNLTGLKTQGQKCHGFYIKPTKDSYTINDCAAWTINGTPLNMIDPGESEKYLGLQFDPWIGIARSGLSTKLDFWLQRIDQAPLKPLQKTDILKTYTIPRLIYIADHSEVKTALLETLDQKIRTAVKEWLHLPPCTCDAILYSSTRDGGLGITKLAGLIPSVQARRLHRIAQSSDDTMKCFMEKEKMEQLHKKLWIQAGGDRENIPSIWEAPPSSEPPNNVSTNSEWEAPTQKDKFPKPCNWRKNEFKKWTKLASQGRGIVNFERDKISNHWIQYYRRIPHRKLLTALQLRANVYPTREFLARGRQDQYIKACRHCDADIESCAHIIGNCPVTQDARIKRHNYICELLLEEAKKKDWVVFKEPHIRDSNKELYKPDLIFVKDARALVVDVTVRYEAAKSSLEEAAAEKVRKYKHLETEVRHLTNAKDVTFVGFPLGARGKWHQDNFKLLTELGLSKSRQVKMAETFSTVALFSSVDIVHMFASRARKSMVM

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
28S DNA bottom strand, 3' side b 211 NA TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACCAGCTGAAAAA
28S DNA bottom strand, 5' side (priming strand) p 13 NA GGCATTTGGCTAT
R2Tg 3'UTR RNA r 333 NA UUCAGGUUAUUUAGAUGCUUAGUUUUUGUACCUUUCUUGUUUUGUUUAGGAUUUUGAUAGUGUUAGUAUUUUUAUAUUUUUGUACGAUUGCAUAAUGUUCUUUUUUAUACAGUUCUGUUUUAAUAAAAUAGACGAUAGCUAGAGACGUUAGGGCAGCCACAAGCCAGUUAGGUAGCGGAUAGUAGGUAGGAACAGACUUUUACUAUUUCAUAACGCGUCAAUUACCACCUGAUUUGGACCAAUUCACGGGAUUUGUCCAAGGUGGACGGGCCACCUUUACUUAACCCGGAAAAGGAACAUAUAUAAUUUAUGUGUGUUCGAUAAAUAGCCAAA
28S DNA top strand t 211 NA TTTTTCAGCTGGTTGACGCGATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAATGAAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTATCTACTATCTAGCGAAACCACAGCCAAGGGAA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-09-19
Deposition Author(s): Edmonds, K.H.K. , Wilkinson, M.E. , Zhang, F.