9DKK
Designed miniproteins potently inhibit and protect against mers-cov. mers-cov s in complex with miniprotein cb3_gggsgggs_sb175, linker 7 (local refinement of two rbds and 2 miniproteins)
PDB DOI: 10.2210/pdb9dkk/pdb
Classification: VIRAL PROTEIN Organism(s): Middle East Respiratory Syndrome-Related Coronavirus , Synthetic Construct
Deposited: 2024-09-09 Deposition Author(s): Seattle Structural Genomics Center For Infectious Disease (Ssgcid) , Tortorici, M.A. , Veesler, D.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.3 Å
Designed miniproteins potently inhibit and protect against mers-cov. mers-cov s in complex with miniprotein cb3_gggsgggs_sb175, linker 7 (local refinement of two rbds and 2 miniproteins)
Seattle Structural Genomics Center For Infectious Disease (Ssgcid) , Tortorici, M.A. , Veesler, D.
Primary Citation of Related Structures: 9DKK
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Spike protein | B | 1366 | Middle East Respiratory Syndrome-Related Coronavirus , Synthetic Construct | MGILPSPGMPALLSLVSLLSVLLMGCVAETGTVDVGPDSVKSACIEVDIQQTFFDKTWPRPIDVSKADGIIYPQGRTYSNITITYQGLFPYQGDHGDMYVYSAGHATGTTPQKLFVANYSQDVKQFANGFVVRIGAAANSTGTVIISPSTSATIRKIYPAFMLGSSVGNFSDGKMGRFFNHTLVLLPDGCGTLLRAFYCILEPRSGNHCPAGNSYTSFATYHTPATDCSDGNYNRNASLNSFKEYFNLRNCTFMYTYNITEDEILEWFGITQTAQGVHLFSSRYVDLYGGNMFQFATLPVYDTIKYYSIIPHSIRSIQSDRKAWAAFYVYKLQPLTFLLDFSVDGYIRRAIDCGFNDLSQLHCSYESFDVESGVYSVSSFEAKPSGSVVEQAEGVECDFSPLLSGTPPQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQISPAAIASNCYSSLILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNPTCLILATVPHNLTTITKPLKYSYINKCSRLLSDDRTEVPQLVNANQYSPCVSIVPSTVWEDGDYYRKQLSPLEGGGWLVASGSTVAMTEQLQMGFGITVQYGTDTNSVCPKLEFANDTKIASQLGNCVEYSLYGVSGRGVFQNCTAVGVRQQRFVYDAYQNLVGYYSDDGNYYCLRACVSVPVSVIYDKETKTHATLFGSVACEHISSTMSQYSRSTRSMLKRRDSTYGPLQTPVGCVLGLVNSSLFVEDCKLPLGQSLCALPDTPSTLTPASVGSVPGEMRLASIAFNHPIQVDQLNSSYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQLLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPVSISTGSRSARSAIEDLLFDKVTIADPGYMQGYDDCMQQGPASARDLICAQYVAGYKVLPPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRLNGVGITQQVLSENQKLIANKFNQALGAMQTGFTTTNEAFQKVQDAVNNNAQALSKLASELSNTFGAISASIGDIIQRLDPPEQDAQIDRLINGRLTTLNAFVAQQLVRSESAALSAQLAKDKVNECVKAQSKRSGFCGQGTHIVSFVVNAPNGLYFMHVGYYPSNHIEVVSAYGLCDAANPTNCIAPVNGYFIKTNNTRIVDEWSYTGSSFYAPEPITSLNTKYVAPQVTYQNISTNLPPPLLGNSTGIDFQDELDEFFKNVSTSIPNFGSLTQINTTLLDLTYEMLSLQQVVKALNESYIDLKELGNYTYYNKGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGGSGLNDIFEAQKIEWHEGGSHHHHHHHH |
| Spike protein | A | 1366 | Middle East Respiratory Syndrome-Related Coronavirus , Synthetic Construct | MGILPSPGMPALLSLVSLLSVLLMGCVAETGTVDVGPDSVKSACIEVDIQQTFFDKTWPRPIDVSKADGIIYPQGRTYSNITITYQGLFPYQGDHGDMYVYSAGHATGTTPQKLFVANYSQDVKQFANGFVVRIGAAANSTGTVIISPSTSATIRKIYPAFMLGSSVGNFSDGKMGRFFNHTLVLLPDGCGTLLRAFYCILEPRSGNHCPAGNSYTSFATYHTPATDCSDGNYNRNASLNSFKEYFNLRNCTFMYTYNITEDEILEWFGITQTAQGVHLFSSRYVDLYGGNMFQFATLPVYDTIKYYSIIPHSIRSIQSDRKAWAAFYVYKLQPLTFLLDFSVDGYIRRAIDCGFNDLSQLHCSYESFDVESGVYSVSSFEAKPSGSVVEQAEGVECDFSPLLSGTPPQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQISPAAIASNCYSSLILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNPTCLILATVPHNLTTITKPLKYSYINKCSRLLSDDRTEVPQLVNANQYSPCVSIVPSTVWEDGDYYRKQLSPLEGGGWLVASGSTVAMTEQLQMGFGITVQYGTDTNSVCPKLEFANDTKIASQLGNCVEYSLYGVSGRGVFQNCTAVGVRQQRFVYDAYQNLVGYYSDDGNYYCLRACVSVPVSVIYDKETKTHATLFGSVACEHISSTMSQYSRSTRSMLKRRDSTYGPLQTPVGCVLGLVNSSLFVEDCKLPLGQSLCALPDTPSTLTPASVGSVPGEMRLASIAFNHPIQVDQLNSSYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQLLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPVSISTGSRSARSAIEDLLFDKVTIADPGYMQGYDDCMQQGPASARDLICAQYVAGYKVLPPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRLNGVGITQQVLSENQKLIANKFNQALGAMQTGFTTTNEAFQKVQDAVNNNAQALSKLASELSNTFGAISASIGDIIQRLDPPEQDAQIDRLINGRLTTLNAFVAQQLVRSESAALSAQLAKDKVNECVKAQSKRSGFCGQGTHIVSFVVNAPNGLYFMHVGYYPSNHIEVVSAYGLCDAANPTNCIAPVNGYFIKTNNTRIVDEWSYTGSSFYAPEPITSLNTKYVAPQVTYQNISTNLPPPLLGNSTGIDFQDELDEFFKNVSTSIPNFGSLTQINTTLLDLTYEMLSLQQVVKALNESYIDLKELGNYTYYNKGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGGSGLNDIFEAQKIEWHEGGSHHHHHHHH |
| Miniprotein cb3_GGGSGGGS_SB175 | D | 144 | Middle East Respiratory Syndrome-Related Coronavirus , Synthetic Construct | MSGSPVKRFVREVLEEAEEAYEKGDRRQFEELLWLAEWAARDANDEELEEEIREFEKEVKGGGSGGGSEALEELEKALRELKKSTDELERSTEELEKNPSEDALVENNRLIVENNKIIVEVLRIIAKVLKGSHHWGSTHHHHHH |
| Miniprotein cb3_GGGSGGGS_SB175 | C | 144 | Middle East Respiratory Syndrome-Related Coronavirus , Synthetic Construct | MSGSPVKRFVREVLEEAEEAYEKGDRRQFEELLWLAEWAARDANDEELEEEIREFEKEVKGGGSGGGSEALEELEKALRELKKSTDELERSTEELEKNPSEDALVENNRLIVENNKIIVEVLRIIAKVLKGSHHWGSTHHHHHH |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2024-09-09 Deposition Author(s): Seattle Structural Genomics Center For Infectious Disease (Ssgcid) , Tortorici, M.A. , Veesler, D.