PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9DGG

Ncprc1rybp bound to unmodified nucleosome

PDB DOI: 10.2210/pdb9dgg/pdb

Classification: NUCLEAR PROTEIN/DNA
Organism(s): Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603

Deposited: 2024-09-02
Deposition Author(s): Armache, J.P. , Armache, K.-J. , Godinez-Lopez, V. , Valencia-Sanchez, M.I.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.98 Å

9dgg
Literature

Ncprc1rybp bound to unmodified nucleosome

Armache, J.P. , Armache, K.-J. , Godinez-Lopez, V. , Valencia-Sanchez, M.I.

Primary Citation of Related Structures: 9DGG


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.2 A 136 Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3.2 E 136 Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 103 Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 103 Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A type 1 C 130 Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 MSGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESAKSAKSK
Histone H2A type 1 G 130 Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 MSGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESAKSAKSK
Histone H2B 1.1 D 126 Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 MPEPAKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone H2B 1.1 H 126 Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 MPEPAKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Polycomb complex protein BMI-1 K 326 Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 MHRTTRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPGLFKNEMKRRRDFYAAHPSADAANGSNEDRGEVADEDKRIITDDEIISLSIEFFDQNRLDRKVNKDKEKSKEEVNDKRYLRCPAAMTVMHLRKFLRSKMDIPNTFQIDVMYEEEPLKDYYTLMDIAYIYTWRRNGPLPLKYRVRPTCKRMKISHQRDGLTNAGELESDSGSDKANSPAGGIPSTSSCLPSPSTPVQSPHPQFPHISSTMNGTSNSPSGNHQSSFANRPRKSSVNGSSATSSG
E3 ubiquitin-protein ligase RING2 L 336 Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYEAHQERVLARINKHNNQQALSHSIEEGLKIQAMNRLQRGKKQQIENGSGAEDNGDSSHCSNASTHSNQEAGPSNKRTKTSDDSGLELDNNNAAMAIDPVMDGASEIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIYIATASGQFTVLNGSFSLELVSEKYWKVNKPMELYYAPTKEHK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (187-MER) i 187 NA ATCGCGACACCGGCACTGGAACAGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCCAGGGGATCGGGCATCACCCGAT
DNA (187-MER) j 187 NA ATCGGGTGATGCCCGATCCCCTGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCTGTTCCAGTGCCGGTGTCGCGAT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-09-02
Deposition Author(s): Armache, J.P. , Armache, K.-J. , Godinez-Lopez, V. , Valencia-Sanchez, M.I.